BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3869.p (170 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC2409 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit ... 89 4e-18 PA0154 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit ... 69 6e-12 Cgl2346 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit... 68 1e-11 SMb20576 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subuni... 64 2e-10 BMEII0635 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subun... 62 5e-10 >CC2409 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Ccr Caulobacter vibrioides Length = 216 Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 94/195 (48%), Gaps = 32/195 (16%) Query: 5 TTSQTIGPFPHEA--WAWAVEL-----------------------TARVDSSAPQVKISG 39 T SQT+GPF H W +L TA+ + + + I G Sbjct: 22 TPSQTVGPFFHYGLPWKGCADLIGDSEIGARPELFPAEHYVLASPTAKGEVAGEPIVIEG 81 Query: 40 AILDGDGVPINDAWAEAWLPGSAG----AETSHAIPGYRRVPTDEEGKFTFSISQPQPPA 95 A+LD DG ++DA E W +AG + G+ R T E+G + F +P Sbjct: 82 AVLDADGKAVSDAMIEIWQADAAGRYVDGSSHSGFIGWGRASTGEDGVYRFVTIRPGRVD 141 Query: 96 GK--PVAYVTVFARGLVKHQFSAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYL 153 + P + VF RG++K + ++ EDD A A +L VPA+RR TLIARK ++ Sbjct: 142 DQQAPHIAIGVFGRGVIKRLATRLYFEDDAANAADPILALVPAERRQTLIARKVGQ-AWR 200 Query: 154 WNIHMQGARETVFFD 168 ++I +QG RETVFFD Sbjct: 201 FDIVLQGDRETVFFD 215 >PA0154 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Pae Pseudomonas aeruginosa Length = 201 Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 32/195 (16%) Query: 5 TTSQTIGPFPHEAWAWAV-----------ELTARVDSSAPQVKISGAILDGDGVPINDAW 53 T SQT GP+ H A A AR + + + G + DG+G + D++ Sbjct: 9 TPSQTAGPYVHIGLALAAAGNPTRDLEIWNRMAREGARGQHILLLGHVYDGNGHLVRDSF 68 Query: 54 AEAWLPGSAGAETSHAIPGY------RRVPTDEEGKFTFSISQP---QPPAGKPVA---Y 101 E W S G P R T + G++T +P + G P+A Sbjct: 69 LEFWQADSEGRYQERYDPERPFNSFGRTATTFDAGEWTLHTVKPGVVRNAQGVPMAPHIN 128 Query: 102 VTVFARGLVKHQFSAVFLEDDPALAQSA----LLEQVPADRRDTLIA-RKQPDG--SYLW 154 V++FARG+ H + ++ +D+ + L+EQ P RRDTL+A R + DG +Y + Sbjct: 129 VSLFARGINIHLQTRLYFDDETEANAACPVLNLIEQAP--RRDTLLAQRCEVDGQLAYRF 186 Query: 155 NIHMQGARETVFFDY 169 +I +QG ETVFFD+ Sbjct: 187 DIRIQGDNETVFFDF 201 >Cgl2346 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Cgl Corynebacterium glutamicum Length = 204 Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 84/178 (47%), Gaps = 16/178 (8%) Query: 4 ITTSQTIGPFPHEAWAWAVELTARVDSSAPQVKISGAILDGDGVPINDAWAEAWLPGSAG 63 IT SQT+GP+ H S V + + DG+G PI DA E W G Sbjct: 27 ITPSQTVGPYVHIGLTLEGAEHLVEPGSEGAVSFTVSATDGNGDPIADAMFELWQADPEG 86 Query: 64 AETSHAIP---------GYR---RVPTDEEGKFTFSISQPQPPAGK-PVAYVTVFARGLV 110 S P G+R R + +G+ TF+ P A + P V VFARG++ Sbjct: 87 IHNSDLDPNRTAPATADGFRGLGRAMANAQGEATFTTLVPGAFADEAPHFKVGVFARGML 146 Query: 111 KHQFSAVFLEDDPALAQSALLEQVPADRRDTLIARKQPDGSYLWNIHMQGA-RETVFF 167 + ++ +L D L+ +L VPADRRD L+A+K DG + ++I +Q ET FF Sbjct: 147 ERLYTRAYLPD-ADLSTDPVLAVVPADRRDLLVAQKTDDG-FRFDITVQAEDNETPFF 202 >SMb20576 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Sme Sinorhizobium meliloti Length = 204 Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 31/194 (15%) Query: 5 TTSQTIGPFPHEAW---------AWAVELTARV---DSSAPQVKISGAILDGDGVPINDA 52 T SQT GP+ H + +L A + + ++ ++G ++DG G+P+ DA Sbjct: 11 TASQTAGPYVHIGLTPSFCGIGGVYEGDLGASMVNDKTLGQRITVTGRVIDGAGMPLRDA 70 Query: 53 WAEAWLPGSAGAETSHA---------IPGYRRVPT-DEEGKFTFSISQPQPPAGK----- 97 E W +AG S + G+ R PT DE G FTF +P + Sbjct: 71 LLEIWQADAAGLYNSPSELRGTADPNFTGWGRSPTSDEGGVFTFETVKPGRVPFRDGRLM 130 Query: 98 -PVAYVTVFARGLVKHQFSAVFLEDDPAL-AQSALLEQVPADRR-DTLIARKQPDGSYLW 154 P + + ARG+ + ++ D+ A A+ LL ++ R +TL+A Q +Y++ Sbjct: 131 APHISIWIVARGINIGLHTRMYFPDEAAANAEDPLLARIEHRHRAETLVAAGQAP-NYVF 189 Query: 155 NIHMQGARETVFFD 168 +IH+QG +ETVF D Sbjct: 190 DIHLQGEKETVFLD 203 >BMEII0635 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Bme Brucella melitensis Length = 214 Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 32/195 (16%) Query: 5 TTSQTIGPFPHEAW---------AWAVELTA----RVDSSAPQVKISGAILDGDGVPIND 51 T SQT GP+ H +A +L + ++ I G ++DG G P+ D Sbjct: 20 TASQTAGPYVHIGLTPNFVGINGVFAEDLGTGPLYNDKAHGERITIKGRVIDGMGAPLRD 79 Query: 52 AWAEAWLPGSAGAETS------HAIPGYR---RVPTD-EEGKFTFSISQPQP---PAGKP 98 A E W +AG S A P +R R P++ E G+F F +P G+ Sbjct: 80 ALVEIWQADAAGLYNSPNESRGKADPHFRGWGRCPSNMETGEFIFETIKPGRVPFRDGRL 139 Query: 99 VA-YVT--VFARGL-VKHQFSAVFLEDDPALAQSALLEQVPADRR-DTLIARKQPDGSYL 153 +A +VT + ARG+ + Q F +++ A A+ +L ++ R TLI +++ D Y Sbjct: 140 MAPHVTLWIVARGINLGLQTRMYFSDEEAANAEDPVLARIEHRMRVPTLIGQREGD-VYH 198 Query: 154 WNIHMQGARETVFFD 168 ++IH+QG +ETVFFD Sbjct: 199 FDIHLQGEKETVFFD 213