BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3867.p (270 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella mel... 238 7e-63 SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium... 226 5e-59 AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium t... 223 4e-58 Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacteriu... 205 9e-53 mlr4184 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium ... 202 8e-52 >BMEII0642 [K] COG1414 Transcriptional regulator Bme Brucella melitensis Length = 256 Score = 238 bits (608), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 169/246 (68%) Query: 25 DLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTFS 84 D V G KGL+VIEAF ++R RL+IA+V+++TGL RA ARR L+TL LGY +D K F Sbjct: 5 DFVGGFAKGLRVIEAFGEDRPRLSIADVSKITGLDRATARRCLLTLAELGYAEYDGKFFM 64 Query: 85 LTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVS 144 L P +LRLG +YL LP I+QP L RL+ S+GE+AS VLD ++V +A S +++S Sbjct: 65 LLPRILRLGHAYLSGTPLPTIIQPHLDRLSQSVGESASASVLDGAEIVYIARASQMRVIS 124 Query: 145 TTLQPGTRVPAYCTANGRILLANLAPAELDTLLARAQPEAITAHTITDVERLALEIARAR 204 L G+R+PAYC + GR+LLA L +E T+L + + A T T D E+L E+ R R Sbjct: 125 INLMAGSRLPAYCASMGRVLLAWLDESEARTILEQTELRARTPFTQKDPEKLMEELRRIR 184 Query: 205 VQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLKIQV 264 QG+A+ DQELELGLR++AVPV N RG VVAA+NI A +++ D+V R LP MLKIQ Sbjct: 185 AQGFAVNDQELELGLRSIAVPVFNHRGAVVAALNIGAPVAHVEVSDLVGRILPEMLKIQS 244 Query: 265 ELGALL 270 EL ++L Sbjct: 245 ELRSML 250 >SMb20586 [K] COG1414 Transcriptional regulator Sme Sinorhizobium meliloti Length = 251 Score = 226 bits (576), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 120/242 (49%), Positives = 164/242 (67%) Query: 25 DLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTFS 84 D V+G +GL+VIEAF + + RL+IA+ A++TGL RA RR L+TL+ LGY +D K F+ Sbjct: 5 DFVSGFARGLKVIEAFGEAQPRLSIADAAKITGLDRATVRRSLLTLSQLGYADYDGKFFT 64 Query: 85 LTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVS 144 LTP LRLG +YL + LP IVQP L +LA G++AS VLD ++V VA S +++S Sbjct: 65 LTPKTLRLGHAYLSATPLPTIVQPYLDQLAEKAGQSASASVLDGTEIVYVARASQRRVMS 124 Query: 145 TTLQPGTRVPAYCTANGRILLANLAPAELDTLLARAQPEAITAHTITDVERLALEIARAR 204 L PG+R+PAYC + GR+LLA L AE +L R++ +A T T TD E L E+ R R Sbjct: 125 INLTPGSRLPAYCASMGRVLLAALPEAEAREILGRSELKANTPLTRTDPEELLTELRRVR 184 Query: 205 VQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLKIQV 264 +GYA++DQELELGL ++AVPV N RG+V+AA+NI AA + +M ER LP + + Q Sbjct: 185 DEGYAIIDQELELGLCSIAVPVANDRGQVLAALNIGASAAHVPAREMAERFLPLLRETQA 244 Query: 265 EL 266 L Sbjct: 245 AL 246 >AGl644 [K] COG1414 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 269 Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 116/248 (46%), Positives = 171/248 (68%) Query: 23 KRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKT 82 +RD++ GL KGL+VIEAF ER RL+I++ A++ GL RA RR L+TL+ LGY +D K Sbjct: 21 ERDMMGGLAKGLRVIEAFSAERPRLSISDAAEIAGLDRATTRRCLLTLSELGYAAYDGKF 80 Query: 83 FSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQL 142 F++TP VLRLG L + LP+IVQPLL RL+ +G++ S +LD ++V VA + ++ Sbjct: 81 FTVTPKVLRLGTGCLATMPLPKIVQPLLDRLSEEIGQSTSVSILDEAEIVYVARAAQQRV 140 Query: 143 VSTTLQPGTRVPAYCTANGRILLANLAPAELDTLLARAQPEAITAHTITDVERLALEIAR 202 +S L PG+R+PAYCT+ GR+LLA +L ++ A T TITD++ L EI Sbjct: 141 MSIALMPGSRLPAYCTSMGRVLLAAQPAERRRDILEASRLVARTEKTITDMDALLAEIEV 200 Query: 203 ARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLKI 262 +GYAL+DQE+E+GLR++AVP++ RG+ VAA+N+ + A+ +E++VER LPA+L + Sbjct: 201 TGHRGYALIDQEVEIGLRSIAVPLKTVRGQTVAALNVGLAASVASMEELVERYLPALLAV 260 Query: 263 QVELGALL 270 Q EL +L Sbjct: 261 QRELARML 268 >Cgl2340 [K] COG1414 Transcriptional regulator Cgl Corynebacterium glutamicum Length = 255 Score = 205 bits (521), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 110/249 (44%), Positives = 157/249 (63%), Gaps = 4/249 (1%) Query: 25 DLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKTFS 84 D V +GL VI +F + T++EVA TGL+RA ARR+L TLT LGY +++ F Sbjct: 7 DFVQSFARGLSVIRSFSADNPSQTLSEVASQTGLSRATARRFLHTLTDLGYAVNNDSRFQ 66 Query: 85 LTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQLVS 144 LTP VL LG SYL + LP I QP L L+ +GE++S VLD ++ V V ++++ Sbjct: 67 LTPRVLELGASYLSALSLPAIAQPRLEVLSRQVGESSSMSVLDGTDIIYVCRVPVRRIMT 126 Query: 145 TTLQPGTRVPAYCTANGRILLANLAPAELDTLLARAQPEAITAHTITDVERLALEIARAR 204 + GTR PAY T+ GRI+LANL ELD +LA A PE +T ++T + + EI R Sbjct: 127 VNITIGTRFPAYATSMGRIMLANLPEEELDEMLAAAPPEQLTTRSLTSIASIREEIIATR 186 Query: 205 VQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLK--- 261 +G++LVDQELE GLR++A P+ N +GEVVA++N+S +A +ED+ + LP +L+ Sbjct: 187 ERGWSLVDQELEPGLRSLAAPITNAQGEVVASINVSTQSASHSVEDIRKLVLPQLLETAQ 246 Query: 262 -IQVELGAL 269 I +L AL Sbjct: 247 AISTDLSAL 255 >mlr4184 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium loti Length = 256 Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 106/239 (44%), Positives = 152/239 (63%) Query: 23 KRDLVAGLEKGLQVIEAFDQERSRLTIAEVAQLTGLTRAAARRYLITLTHLGYMRHDNKT 82 RD V LE+GL V+E + S +T+ E+A+ GLTRA ARR+L+TL GY D + Sbjct: 7 SRDHVGSLERGLAVMEILARHPSGMTLTEMAEQAGLTRAGARRFLLTLVATGYATQDGRM 66 Query: 83 FSLTPMVLRLGQSYLHSARLPRIVQPLLYRLAYSLGEAASCGVLDHDQLVCVAAVSAGQL 142 FSL+P +L + +++L L P++ +A L EA S +L +V VA + ++ Sbjct: 67 FSLSPRLLAVARTWLGGGSLWSFAAPIMRTVAAQLNEACSAAILSGQDVVYVARIPGRRI 126 Query: 143 VSTTLQPGTRVPAYCTANGRILLANLAPAELDTLLARAQPEAITAHTITDVERLALEIAR 202 +S +L GTR+PAYCT+ GR+LLA LAP ELD L +A E T TITD+ LA I + Sbjct: 127 LSVSLDVGTRLPAYCTSMGRMLLAGLAPEELDEFLHQATIERRTPKTITDIGLLAEAIGK 186 Query: 203 ARVQGYALVDQELELGLRTMAVPVRNFRGEVVAAMNISVHAARMKLEDMVERCLPAMLK 261 AR G+A+VD+ELELGLR++AVP+R+ G VAA+N+S +AR + +M LPA+L+ Sbjct: 187 ARADGFAIVDEELELGLRSIAVPIRDRAGNTVAAINVSTQSARFSVAEMEREILPALLE 245