BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3862.p         (152 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DRA0049 [T] COG0784 FOG Dra Deinococcus radiodurans                    56   4e-08
alr1967 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                        54   1e-07
alr3120_6 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                      52   5e-07
MTH445 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus      52   7e-07
MA1269 [T] COG0784 FOG Mac Methanosarcina acetivorans str.C2A          51   1e-06

>DRA0049 [T] COG0784 FOG Dra Deinococcus radiodurans
          Length = 149

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 18  LARFALWRAGLHCVFRACPDMATARRCLLQGRRSGDVEPPSLILLESEMDCGDGLELLRE 77
           L   AL  + +H       D   A   L Q +  G    P LILL+  M   DG ELL+ 
Sbjct: 23  LMEMALEYSSVHTELLVARDGLEALELLEQAKTGGPF--PDLILLDLNMPRVDGFELLQA 80

Query: 78  LRASKHLADAPVVVF-PSHDLEGEREALAAGASQYLPKPIDGEHYARCVVEIVERWCDVA 136
           LRA  HLA  P +V   S+D    + A A  A+ YL KP   E + + +  +   W   A
Sbjct: 81  LRADPHLAHLPAIVLTTSNDPSDVKRAYALQANSYLTKPSTLEDFLQLIERLTAYWFGTA 140


>alr1967 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 148

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 1/133 (0%)

Query: 6   IVMIDPSQEAAELARFALWRAGLHCVFRACPDMATARRCLLQGRRSGDVEPPSLILLESE 65
           +++++ +    EL R AL  + +        D   A   L +  +  +V  P ++LL+  
Sbjct: 12  VLLVEDNPGDVELTRIALEDSKISVHLSVVEDGVEAMAFLRKQDKYANVPHPDIVLLDFN 71

Query: 66  MDCGDGLELLRELRASKHLADAPVVVFPSHDLEGE-REALAAGASQYLPKPIDGEHYARC 124
           +   DG E+L E++   +L   PVVV  +   E +  +A    A+ Y+ KP+D + + R 
Sbjct: 72  LPRKDGREVLAEIKTDSYLKRIPVVVLTTSQAEEDILKAYNLAANCYITKPVDFDQFVRI 131

Query: 125 VVEIVERWCDVAQ 137
           V  I   W  + +
Sbjct: 132 VQSIENFWFAIVK 144


>alr3120_6 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 123

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 54  VEPPSLILLESEMDCGDGLELLRELRASKHLADAPVVVFPSHDLEGERE-ALAAGASQYL 112
           +  P LIL++ +M   DGLE +R++R    L + P+V   +  + G+R+  L AGA+ YL
Sbjct: 42  IHQPDLILMDIQMPGIDGLEAIRQIRLDPQLVNIPIVALTALAMTGDRDRCLQAGANDYL 101

Query: 113 PKPIDGEHYARCVVEIV 129
            KP+  +  A  + +++
Sbjct: 102 TKPVKLKQLATTIQQLL 118


>MTH445 [T] COG0784 FOG Mth Methanothermobacter thermautotrophicus
          Length = 145

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 1   MNFPSIVMIDPSQEAAELARFALWRAGLHCVFRACPDMATARRCLLQGRRSGDVEP---P 57
           M    I++++ +   AEL   AL +  L        D A A   +       D +P   P
Sbjct: 2   MTDADILLVEDNPTDAELTIRALKKNNLANKLHWVKDGAEALDYIFASGSYSDRDPENLP 61

Query: 58  SLILLESEMDCGDGLELLRELRASKHLADAPVVVFPSHDLEGE-REALAAGASQYLPKPI 116
            LILL+  M   DGLE+L+E++ +   +  PVVV  S   + +  E+   G + Y+ KP+
Sbjct: 62  KLILLDLRMPKVDGLEVLQEIKRNDSTSKIPVVVLTSSKEDRDIVESYKLGVNSYVSKPV 121

Query: 117 DGEHYARCVVEIVERWCDVAQ 137
           + + +   V  +   W  + Q
Sbjct: 122 EFDEFISAVSTLGFYWMIINQ 142


>MA1269 [T] COG0784 FOG Mac Methanosarcina acetivorans str.C2A
          Length = 146

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 25  RAGLHCVFRACPDMATARRCLLQGRRSGDVEPPSLILLESEMDCGDGLELLRELRASKHL 84
           R  L+ V     D   A   LL+  +  DV  P +ILL+  +   DG E+L E++    L
Sbjct: 35  RNKLYVV----EDGEEAVHFLLREGKFSDVPRPGIILLDLNLPKKDGREVLEEIKEDDDL 90

Query: 85  ADAPVVVFPSHDLEGE-REALAAGASQYLPKPIDGEHYARCVVEIVERWCDVAQ 137
            + PVVV  +   E +  E+    A+ Y+ KP+D + + + +  I   W +V  
Sbjct: 91  KNIPVVVLTTSRAEEDILESYKLHANAYVTKPVDFDQFIKVIKSIENFWLEVVN 144