BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3858.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2905 [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase... 280 2e-75 NMB1945 [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase... 223 2e-58 NMA0507 [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase... 221 9e-58 SMb20135 [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylas... 216 3e-56 ubiX [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase Ec... 213 2e-55 >RSc2905 [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase Rso Ralstonia solanacearum Length = 218 Score = 280 bits (716), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 129/186 (69%), Positives = 160/186 (86%) Query: 12 LIVAITGATGAIYGVRLLEHLRKHGQVQTHLMISEAGVLNLHQELDMRRKDVDALADVVH 71 +IVAITGA+GAIYGVRLL+ LR V++HL++S AG++N+ EL M R++V+ALA VVH Sbjct: 28 IIVAITGASGAIYGVRLLQVLRDTAGVESHLLMSPAGLMNVQHELQMTREEVEALAHVVH 87 Query: 72 NVRDVGACIASGSFASTGMVVAPCSMKTLAAVAHGLSDNLITRAADVVLKERRRLVLMVR 131 NVRD+GA IASGSFA+ MVVAPCSMKTLAA+AHGLSDNLI RAADV LKERRRL+LMVR Sbjct: 88 NVRDIGATIASGSFAAEAMVVAPCSMKTLAAIAHGLSDNLIARAADVTLKERRRLILMVR 147 Query: 132 ETPFNLAHLRNMTAVTEMGGVIFPPLPGFYQRPASMEEMVDHTLGRVLDMFGISLQLTPE 191 ETP NLAHLRNMTAVTEMGG++FPP+PGFYQRP +++++VDHT+GRVLD+ G+ L Sbjct: 148 ETPLNLAHLRNMTAVTEMGGIVFPPVPGFYQRPKTIDDLVDHTVGRVLDLLGLPQTLAAS 207 Query: 192 WQGMKA 197 W G+++ Sbjct: 208 WPGLQS 213 >NMB1945 [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase Nme Neisseria meningitidis MC58 Length = 190 Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 107/186 (57%), Positives = 139/186 (74%), Gaps = 1/186 (0%) Query: 10 QRLIVAITGATGAIYGVRLLEHLRKHGQVQTHLMISEAGVLNLHQELDMRRKDVDALADV 69 +RLI+ I+GA+G YGV+ LE LR V+THL++S+ + E R +V ALAD Sbjct: 4 RRLIIGISGASGFQYGVKALELLRAQ-DVETHLVVSKGAEMARASETAYARDEVYALADF 62 Query: 70 VHNVRDVGACIASGSFASTGMVVAPCSMKTLAAVAHGLSDNLITRAADVVLKERRRLVLM 129 VH + ++GACIASG+F + GM+VAPCSM+TLA+VAHG DNL+TRAADVVLKERRRLVLM Sbjct: 63 VHPIGNIGACIASGTFKTDGMLVAPCSMRTLASVAHGFGDNLLTRAADVVLKERRRLVLM 122 Query: 130 VRETPFNLAHLRNMTAVTEMGGVIFPPLPGFYQRPASMEEMVDHTLGRVLDMFGISLQLT 189 VRETP NLAHL NM VTEMGGV+FPP+P Y++P + +++V H++ L +FGI + Sbjct: 123 VRETPLNLAHLDNMKRVTEMGGVVFPPVPAMYRKPQTADDIVAHSVAHALSLFGIDTPDS 182 Query: 190 PEWQGM 195 EWQGM Sbjct: 183 AEWQGM 188 >NMA0507 [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase NmA Neisseria meningitidis Z2491 Length = 189 Score = 221 bits (563), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 105/186 (56%), Positives = 138/186 (74%), Gaps = 1/186 (0%) Query: 10 QRLIVAITGATGAIYGVRLLEHLRKHGQVQTHLMISEAGVLNLHQELDMRRKDVDALADV 69 +RLI+ I+GA+G YGV+ LE LR ++THL++S+ + E R +V ALAD Sbjct: 3 RRLIIGISGASGFQYGVKALELLRAQ-DIETHLVVSKGAEMARASETAYARDEVYALADF 61 Query: 70 VHNVRDVGACIASGSFASTGMVVAPCSMKTLAAVAHGLSDNLITRAADVVLKERRRLVLM 129 VH + ++GACIASG+F + GM+VAPCSM+TLA+V HG DNL+TRAADVVLKERRRLVLM Sbjct: 62 VHPIGNIGACIASGTFKTDGMLVAPCSMRTLASVVHGFGDNLLTRAADVVLKERRRLVLM 121 Query: 130 VRETPFNLAHLRNMTAVTEMGGVIFPPLPGFYQRPASMEEMVDHTLGRVLDMFGISLQLT 189 VRETP NLAHL NM VTEMGGV+FPP+P Y++P + +++V H++ L +FGI + Sbjct: 122 VRETPLNLAHLDNMKRVTEMGGVVFPPVPAMYRKPQTADDIVAHSVAHALSLFGIDTPDS 181 Query: 190 PEWQGM 195 EWQGM Sbjct: 182 AEWQGM 187 >SMb20135 [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase Sme Sinorhizobium meliloti Length = 210 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 100/192 (52%), Positives = 141/192 (73%), Gaps = 1/192 (0%) Query: 7 QPRQRLIVAITGATGAIYGVRLLEHLRKHGQVQTHLMISEAGVLNLHQELDMRRKDVDAL 66 + R+R+IV I+GA+G IYG+RLLE LR ++THL++S A + L E D + DV+AL Sbjct: 6 EQRKRIIVGISGASGVIYGIRLLEILRDL-DIETHLVMSRAAQITLAMETDFKVADVEAL 64 Query: 67 ADVVHNVRDVGACIASGSFASTGMVVAPCSMKTLAAVAHGLSDNLITRAADVVLKERRRL 126 A VH+ +D+GA +SGSF + GM+VAPCS+KTL+ +A G++ L++RAADV LKERRRL Sbjct: 65 AACVHSNKDIGASCSSGSFRTLGMIVAPCSIKTLSEIATGVTSGLLSRAADVTLKERRRL 124 Query: 127 VLMVRETPFNLAHLRNMTAVTEMGGVIFPPLPGFYQRPASMEEMVDHTLGRVLDMFGISL 186 VLM+RETP ++ H+R+M TE G +I PP+P FY RP +++EMV+HT+ RVLD+F I Sbjct: 125 VLMLRETPLHIGHIRSMAQATEAGAIICPPVPAFYARPQTLDEMVNHTVARVLDLFDIDT 184 Query: 187 QLTPEWQGMKAG 198 L W G++A Sbjct: 185 GLAHRWSGLRAA 196 >ubiX [H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase Eco Escherichia coli K12 Length = 189 Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 103/187 (55%), Positives = 135/187 (72%), Gaps = 2/187 (1%) Query: 10 QRLIVAITGATGAIYGVRLLEHLRKHGQVQTHLMISEAGVLNLHQELDMRRKDVDALADV 69 +RLIV I+GA+GAIYGVRLL+ LR ++THL++S+A L E D ++V ALADV Sbjct: 2 KRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTLSLETDFSLREVQALADV 61 Query: 70 VHNVRDVGACIASGSFASTGMVVAPCSMKTLAAVAHGLSDNLITRAADVVLKERRRLVLM 129 H+ RD+ A I+SGSF + GMV+ PCS+KTL+ + H +D L+TRAADVVLKERR LVL Sbjct: 62 THDARDIAASISSGSFQTLGMVILPCSIKTLSGIVHSYTDGLLTRAADVVLKERRPLVLC 121 Query: 130 VRETPFNLAHLRNMTAVTEMGGVIFPPLPGFYQRPASMEEMVDHTLGRVLDMFGISL--Q 187 VRETP +L HLR MT E+G VI PP+P FY RP S++++++ T+ RVLD F I+L Sbjct: 122 VRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLDDVINQTVNRVLDQFAITLPED 181 Query: 188 LTPEWQG 194 L WQG Sbjct: 182 LFARWQG 188