BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3854.p (249 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0409 [R] COG1137 ABC-type (unclassified) transport system, AT... 370 e-102 NMB0356 [R] COG1137 ABC-type (unclassified) transport system, AT... 325 4e-89 NMA2131 [R] COG1137 ABC-type (unclassified) transport system, AT... 322 6e-88 VC2528 [R] COG1137 ABC-type (unclassified) transport system, ATP... 310 2e-84 STM3319 [R] COG1137 ABC-type (unclassified) transport system, AT... 306 2e-83 >RSc0409 [R] COG1137 ABC-type (unclassified) transport system, ATPase component Rso Ralstonia solanacearum Length = 262 Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/246 (74%), Positives = 215/246 (87%) Query: 4 ATSSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQ 63 +S+LVVR LKK YG R VV+DVS++V+SGEVVGLLGPNGAGKTTSFYMIVGLV D G Sbjct: 17 TSSTLVVRHLKKRYGTRTVVKDVSLDVKSGEVVGLLGPNGAGKTTSFYMIVGLVALDAGD 76 Query: 64 IDLDGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRDEIE 123 I LDG ISRLPIH+RA +GLSYLPQEASVFRKL+V++NIRAVLEL++++GK LS E+ Sbjct: 77 IVLDGQHISRLPIHQRARMGLSYLPQEASVFRKLNVQENIRAVLELQEQDGKPLSSTEVN 136 Query: 124 GRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIE 183 RL+ LL +LQI LR++ ALSLSGGERRRVEIARALA+ PRF+LLDEPFAG+DPIAV E Sbjct: 137 RRLDALLDDLQIAHLRDNPALSLSGGERRRVEIARALASSPRFILLDEPFAGVDPIAVGE 196 Query: 184 IQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYL 243 IQRIV FLK+R IGVLITDHNVRETLGICD AYII++GTVLA+G PE+I+ NE VR+VYL Sbjct: 197 IQRIVSFLKDRNIGVLITDHNVRETLGICDHAYIISEGTVLAAGMPEQIVENEDVRKVYL 256 Query: 244 GEHFRM 249 G++FRM Sbjct: 257 GDNFRM 262 >NMB0356 [R] COG1137 ABC-type (unclassified) transport system, ATPase component Nme Neisseria meningitidis MC58 Length = 254 Score = 325 bits (834), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 158/248 (63%), Positives = 198/248 (79%), Gaps = 5/248 (2%) Query: 1 MTMATSSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSD 60 M+ S LVV+ L+KS+ RQVV+ S+E+ SGEV+GLLGPNGAGKTTSFYMIVGL+ +D Sbjct: 11 MSANVSRLVVQNLQKSFKKRQVVKSFSLEIESGEVIGLLGPNGAGKTTSFYMIVGLIAAD 70 Query: 61 GGQIDLDGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRD 120 G + LDG + LPIH+RA LG+ YLPQEAS+FRK++VE NIRA+LE+R ++ ++ Sbjct: 71 AGSVTLDGQELRHLPIHERARLGVGYLPQEASIFRKMTVEQNIRAILEIRTKD-----KN 125 Query: 121 EIEGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIA 180 +I+ + LL +L I LR S A SLSGGERRRVEIAR LA P F+LLDEPFAG+DPIA Sbjct: 126 QIDREIEKLLADLNIGHLRRSPAPSLSGGERRRVEIARVLAMKPHFILLDEPFAGVDPIA 185 Query: 181 VIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRR 240 VI+IQ+I+ FLK RGIGVLITDHNVRETL ICDRAYII+ GTVLASG P++++ NE VR Sbjct: 186 VIDIQKIIGFLKSRGIGVLITDHNVRETLSICDRAYIISDGTVLASGKPDDLVGNEQVRS 245 Query: 241 VYLGEHFR 248 VYLG++F+ Sbjct: 246 VYLGKNFK 253 >NMA2131 [R] COG1137 ABC-type (unclassified) transport system, ATPase component NmA Neisseria meningitidis Z2491 Length = 254 Score = 322 bits (824), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 157/248 (63%), Positives = 196/248 (79%), Gaps = 5/248 (2%) Query: 1 MTMATSSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSD 60 M+ S LVV+ L+KS+ RQVV+ S+E+ SGEVVGLLGPNGAGKTTSFYMIVGL+ +D Sbjct: 11 MSANVSRLVVQNLQKSFKKRQVVKSFSLEIESGEVVGLLGPNGAGKTTSFYMIVGLIAAD 70 Query: 61 GGQIDLDGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRD 120 G + LDG + LPIH+RA LG+ YLPQEAS+FRK++VE NIRA+LE+R ++ ++ Sbjct: 71 AGSVMLDGQELRHLPIHERARLGVGYLPQEASIFRKMTVEQNIRAILEIRTKD-----KN 125 Query: 121 EIEGRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIA 180 +I+ + LL +L I LR S SLSGGERRRVEIAR LA P F+LLDEPFAG+DPIA Sbjct: 126 QIDREIEKLLADLNIGHLRRSPTPSLSGGERRRVEIARVLAMKPHFILLDEPFAGVDPIA 185 Query: 181 VIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRR 240 VI+IQ+I+ FLK RGIGVLITDHNVRETL ICDRAYII+ G VLASG P++++ NE VR Sbjct: 186 VIDIQKIIGFLKSRGIGVLITDHNVRETLSICDRAYIISDGAVLASGKPDDLVGNEQVRS 245 Query: 241 VYLGEHFR 248 VYLG++F+ Sbjct: 246 VYLGKNFK 253 >VC2528 [R] COG1137 ABC-type (unclassified) transport system, ATPase component Vch Vibrio cholerae Length = 241 Score = 310 bits (795), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 146/242 (60%), Positives = 196/242 (80%), Gaps = 4/242 (1%) Query: 8 LVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQIDLD 67 L + L KSY R+VV DVS++V SG++VGLLGPNGAGKTTSFYMIVGLV D G I +D Sbjct: 4 LKAQHLAKSYKKRKVVSDVSLQVESGQIVGLLGPNGAGKTTSFYMIVGLVARDEGTITID 63 Query: 68 GAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRDEIEGRLN 127 IS LP+H R+ +G+ YLPQEAS+FRKLSVEDNI AVL+ R+E L+ +E + +L Sbjct: 64 DNDISILPMHSRSRMGIGYLPQEASIFRKLSVEDNIMAVLQTREE----LTHEERQDKLE 119 Query: 128 NLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRI 187 +LL E I+ +R+S ++LSGGERRRVEIARALA +P+F+LLDEPFAG+DPI+VI+I++I Sbjct: 120 DLLEEFHIQHIRKSAGMALSGGERRRVEIARALAANPQFILLDEPFAGVDPISVIDIKKI 179 Query: 188 VRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGEHF 247 + L++RG+GVLITDHNVRETL +C++AYI++QG ++A G P++++ NE V++VYLGE F Sbjct: 180 IEHLRDRGLGVLITDHNVRETLDVCEKAYIVSQGRLIAEGTPQDVLNNEQVKQVYLGEQF 239 Query: 248 RM 249 R+ Sbjct: 240 RL 241 >STM3319 [R] COG1137 ABC-type (unclassified) transport system, ATPase component Sty Salmonella typhimurium LT2 Length = 241 Score = 306 bits (785), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 146/244 (59%), Positives = 192/244 (78%), Gaps = 4/244 (1%) Query: 6 SSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGQID 65 ++L + L K+Y R+VV DVS+ V SGE+VGLLGPNGAGKTT+FYM+VG+VP D G I Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61 Query: 66 LDGAPISRLPIHKRATLGLSYLPQEASVFRKLSVEDNIRAVLELRKEEGKALSRDEIEGR 125 +D IS LP+H RA G+ YLPQEAS+FR+LSV DN+ AVL++R + L+ ++ E R Sbjct: 62 IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVFDNLMAVLQIRDD----LTAEQREDR 117 Query: 126 LNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQ 185 N L+ E IE LR+S +LSGGERRRVEIARALA +P+F+LLDEPFAG+DPI+VI+I+ Sbjct: 118 ANELMEEFHIEHLRDSMGQALSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIK 177 Query: 186 RIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGE 245 RI+ L++ G+GVLITDHNVRETL +C+RAYI++QG ++A G P EI+ +E V+RVYLGE Sbjct: 178 RIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGE 237 Query: 246 HFRM 249 FR+ Sbjct: 238 DFRL 241