BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3852.p         (206 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0411 Non COG                                                        88   2e-17
XF1411 [S] COG3117 Uncharacterized protein conserved in bacteria...    53   4e-07
PA4459 [S] COG3117 Uncharacterized protein conserved in bacteria...    49   9e-06
STM3317 [S] COG3117 Uncharacterized protein conserved in bacteri...    42   6e-04
yrbK [S] COG3117 Uncharacterized protein conserved in bacteria E...    38   0.017

>RSc0411 Non COG
          Length = 210

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 4/189 (2%)

Query: 12  RIRLAVILVILVGAALG-SFWVLQALRATGDQQPAQRPRGKPDYYLENFSYVKMGPTGLP 70
           +I L  + ++L+    G +F ++Q      ++   Q  R   DY ++  S   +   G+ 
Sbjct: 15  QIMLRGLPILLMAVVCGVTFLLVQVNTPQTEETANQAKRHVADYTMDGISATALDERGVT 74

Query: 71  RYDVSGVKMVHFPSDDSFEITKPVVHNLDQDQAPMQLYSDTARVTDDQTQIHMYGNANAI 130
           +Y  +GV M H+  D ++++T P +     D+  +   +D  ++  + + I +Y NA  +
Sbjct: 75  KYRFTGVHMNHYEDDLTYDVTFPALRIYAPDRPQVTARADLGKMNGEGSIIDLYDNAKVV 134

Query: 131 RAPYKGHEQ---MHLVSQYLLLLPDDEIVKTDKPVTMTMGTTRLSGVGMVANNATQVVQL 187
           RA      Q   M   S Y  +L +D++V+TDKPV +  G + ++  G+V NN T+ VQL
Sbjct: 135 RAQGPDLRQDPLMTADSTYFQVLLNDDVVRTDKPVELHRGPSVMNANGLVFNNVTRQVQL 194

Query: 188 FGNVRGYYE 196
            GNVRG  E
Sbjct: 195 LGNVRGRIE 203


>XF1411 [S] COG3117 Uncharacterized protein conserved in bacteria Xfa
           Xylella fastidiosa 9a5c
          Length = 189

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 3/184 (1%)

Query: 16  AVILVILVGAALGSFWVLQALRATGDQQPAQRPRGKPDYYLENFSYVKMGP-TGLPRYDV 74
           +++ ++L+ AA+ S W     R      P +      DY L++F  V +   TG     +
Sbjct: 5   SILNIMLLLAAIVSGWSAWHQRKHTQATPLRDIAA--DYTLQDFKLVALDTQTGKESLTL 62

Query: 75  SGVKMVHFPSDDSFEITKPVVHNLDQDQAPMQLYSDTARVTDDQTQIHMYGNANAIRAPY 134
            G +M H  +D S E+T P+    DQ      L + T  +  D T + +  +        
Sbjct: 63  LGQQMQHNQTDSSAEVTAPLFMIPDQAGQHWTLQAQTGWINKDGTLLRLRHDVKGDSPTD 122

Query: 135 KGHEQMHLVSQYLLLLPDDEIVKTDKPVTMTMGTTRLSGVGMVANNATQVVQLFGNVRGY 194
            G       +Q L + P+  + KT   VT+T      +GVG   N  TQ  +L   V   
Sbjct: 123 LGQVPTTFRTQSLDIYPNHHLAKTTDAVTITHQGIIQTGVGFEVNTKTQQYKLNSKVNTR 182

Query: 195 YEPT 198
           YEP+
Sbjct: 183 YEPS 186


>PA4459 [S] COG3117 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 190

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 1/144 (0%)

Query: 53  DYYLENFSYVKMGPTGLPRYDVSGVKMVHFPSDDSFEITKPVVHNLDQDQAPMQLYSDTA 112
           DYY EN   ++    G   Y+++ VK+ H  + D   +T P +     +  P  + S  A
Sbjct: 46  DYYAENAHSLQYQEDGSLDYEMTAVKLEHQKATDITFVTTPDLLLFRGNVQPWHIQSARA 105

Query: 113 RVTDDQTQIHMYGNANAIRAPYKGHEQMHLVSQYLLLLPDDEIVKTDKPVTMTMGTTRLS 172
            V     ++ +  +    R   KG   + L +  L + PD    +T++ V +       +
Sbjct: 106 EVGPKGKEVELIDDVRVARTDAKGQPSI-LTTTRLTVFPDKNYAQTEQAVKIDAANGVTT 164

Query: 173 GVGMVANNATQVVQLFGNVRGYYE 196
            VGM A      + L  NVRG +E
Sbjct: 165 AVGMKAYLKDSRMHLLSNVRGQHE 188


>STM3317 [S] COG3117 Uncharacterized protein conserved in bacteria Sty
           Salmonella typhimurium LT2
          Length = 191

 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 28/201 (13%)

Query: 13  IRLAVILVILVGAALGSFWVLQALRATGDQQPAQRPRGKPDYYLENFSYVKMGPTGLPRY 72
           I L++ +++L+G  L             D          P Y  E+   V   P G   Y
Sbjct: 10  ILLSLAILVLIGINLAD---------KDDPAAVMVNSNDPTYKSEHTDTVVYSPEGALSY 60

Query: 73  DVSGVKMVHFPSDDSFEITKPVVHNLDQDQAP-MQLYSDTARVTDDQTQIHMYGN--ANA 129
            +    + +F        T+PV+   D+D+ P   + +D A++T+D+  +++YG+   NA
Sbjct: 61  RLIAQHVEYFSDQAVSWFTQPVLTTFDKDKVPTWSIKADKAKLTNDR-MLYLYGHVEVNA 119

Query: 130 ------IRAPYKGHEQMHLVSQYLLLLPDDEIVKTDKPVTMTMGTTRLSGVGMVANNATQ 183
                 +R     + Q++LV+Q          V ++  VT+   T   SG+ M  N  ++
Sbjct: 120 LVPDAQLRRITTDNAQINLVTQD---------VTSNDLVTLYGTTFNSSGLKMRGNLRSK 170

Query: 184 VVQLFGNVRGYYEPTPKTRTP 204
             +L   VR  YE   K   P
Sbjct: 171 NAELIEKVRTSYEIQNKQTQP 191


>yrbK [S] COG3117 Uncharacterized protein conserved in bacteria Eco
           Escherichia coli K12
          Length = 191

 Score = 37.7 bits (86), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 21/163 (12%)

Query: 52  PDYYLENFSYVKMGPTGLPRYDVSGVKMVHFPSDDSFE-ITKPVVHNLDQDQAP-MQLYS 109
           P Y  E+   +   P G   Y +   + V + SD +    T+PV+   D+D+ P   + +
Sbjct: 40  PTYKSEHTDTLVYNPEGALSYRLIA-QHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKA 98

Query: 110 DTARVTDDQTQIHMYGN--ANA------IRAPYKGHEQMHLVSQYLLLLPDDEIVKTDKP 161
           D A++T+D+  +++YG+   NA      +R     + Q++LV+Q          V ++  
Sbjct: 99  DKAKLTNDR-MLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQ---------DVTSEDL 148

Query: 162 VTMTMGTTRLSGVGMVANNATQVVQLFGNVRGYYEPTPKTRTP 204
           VT+   T   SG+ M  N  ++  +L   VR  YE   K   P
Sbjct: 149 VTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQTQP 191