BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3848.p (541 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 392 e-108 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 391 e-108 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 372 e-102 RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 371 e-102 RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 356 8e-98 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust. Identities = 247/535 (46%), Positives = 343/535 (64%), Gaps = 16/535 (2%) Query: 2 FSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDR--LVALSQLERMSA 59 S + I RL A + LL+ +G+ L N +MG + +R L+ALS + + Sbjct: 3 ISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNG 62 Query: 60 ALDAARNGISTSI--VGDSGDIDANMDKIEKALKANDAVVMKYQQTPLSSEERALLEKMI 117 NGI +++ V M +AN + ++ + + +AL ++ Sbjct: 63 Y---KANGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQF 119 Query: 118 AQRQKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRS-VGREM 176 R + ++ + + Q A LY G M +L + + +++D Q + ++ Sbjct: 120 DARSAYGAS-VRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDV 178 Query: 177 HEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQRI 236 E A Q + ++ +A+LA L+ A+ G + R I+RP+ A+ +A+ VA G+LT + Sbjct: 179 SEAAAQGANAKIQMIVLAVLATLL-AIATGAFITRTITRPINHAMHLAEAVAQGNLTHLL 237 Query: 237 EVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGA 296 EV +QDE G+L+ AL+ M +NL GIV QVR TDTI ASSE+A GN+DLSSRTEQQA + Sbjct: 238 EVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASS 297 Query: 297 LEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNKI 356 LEETA+AMEQLTSTV+ NA+NAQ+A +LA +AS VA +GG V + + TMS+IN SS KI Sbjct: 298 LEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKI 357 Query: 357 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLI 416 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LI Sbjct: 358 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALI 417 Query: 417 DDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQMD 476 +DSV V +G+A V +AG I +VV +Q V+ +V+EISA+ +EQS GIE++N AITQMD Sbjct: 418 EDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMD 477 Query: 477 ESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRLN------GPALPGPAAGVS 525 ++TQ+NA+LVE++A AAQA+Q+QA +L+ VS F+L+ G A G A V+ Sbjct: 478 KATQENASLVEESATAAQALQDQANQLADMVSTFKLHADLSGRGRAAQGEAGSVA 532 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust. Identities = 249/525 (47%), Positives = 344/525 (65%), Gaps = 15/525 (2%) Query: 1 MFSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAA 60 MF ++IR RL ++A +A+L V G G++ +R N ++ + YE +L L A+ Sbjct: 1 MFRGMTIRLRLALMMAGVAVLAVVIGTTGLLGMRHANTRVQATYEMQLAGAVALAESDAS 60 Query: 61 LDAARNGISTSIVGDSGDIDANMDKIEKALK-------ANDAVVMKYQQTPLSSEERALL 113 + +S +V D +D + K L+ +DA +Y+ P + +ER L Sbjct: 61 M------LSFRLVLDRAAMDIKAPSLGKTLERARMFLAKSDASWKRYRALPSTPDERKLA 114 Query: 114 EKMIAQRQKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVG 173 ++ A R F+ +G + +A++ D + + M LY + L +Q + Sbjct: 115 DEADALRTVFLRDGAQALMQAIQAGDAERTSQTVMEAMPALYRPLGDKVTALSRMQMEIA 174 Query: 174 REMHEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLT 233 R +E Q+ + L + +L G+V L+ L R+I+ PL RA++ A+ + GDLT Sbjct: 175 RASYEAGQREHDGLSALTAALLLVGIVGGGLLTWSLRRSITVPLNRAIEQAEHITRGDLT 234 Query: 234 QRIEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQ 293 I V DETG+++ ALQ+M ++LQG+VGQVR +D IA+A+ +IA GN DLS RTEQQ Sbjct: 235 HAIHVDRADETGRMLLALQRMQESLQGMVGQVRTGSDAIASATQQIAAGNADLSQRTEQQ 294 Query: 294 AGALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSS 353 A +LEETAS+MEQLT V+ NA++A+QA LA +AS++AV+GG+VV +VV+TM+ I+ SS Sbjct: 295 ASSLEETASSMEQLTGMVKQNADSARQASTLAVNASDIAVKGGEVVGRVVETMAGIHDSS 354 Query: 354 NKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 413 KI DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK Sbjct: 355 RKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIK 414 Query: 414 VLIDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAIT 473 LI DSV RV SG+ LVA+AG IDEVV +V++V+ ++ EISAA QS+GI +VN+A+T Sbjct: 415 TLISDSVGRVESGTTLVAEAGTVIDEVVVAVKRVTGIMGEISAASDAQSEGIAQVNQAVT 474 Query: 474 QMDESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRL--NGPA 516 QMDE+TQQNAALVEQAAAAA ++QEQA L V+ FR + PA Sbjct: 475 QMDEATQQNAALVEQAAAAAMSLQEQADGLRGTVAAFRTRADAPA 519 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust. Identities = 255/518 (49%), Positives = 353/518 (68%), Gaps = 17/518 (3%) Query: 6 SIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAALDAAR 65 SIR+RL ++A A+++ A G G+ + R+TNA + ++Y + L L + +A L AR Sbjct: 10 SIRTRLTVLVAAFAVMVAAVGGTGIATGRATNADLRAVYLEDAKGLDLLAKDTANLLWAR 69 Query: 66 NGISTSIVGDSGDIDANMDKIEKALKANDAVV-------MKYQQTPLSSEERALLEKMIA 118 ++ + D ++ +++ K LK A+V + Q P+ +RA L+ A Sbjct: 70 IHLT------NFDSVSSPEELAKLLKDAHAMVDAANAAWAAFTQLPIPDADRAQLQAADA 123 Query: 119 QRQKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVGREMHE 178 R +FV ++PA AL D +L + +L+A A L L+ + + G+ + Sbjct: 124 ARARFVKTALEPAITALERSDLTTYRDLNTTQVPQLFAVYDAALQPLVKARFAYGQARFD 183 Query: 179 QAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQRIEV 238 ++Q RY + + G +LA LV++++ G+L R + RPL+RA+ V + +AAGDL R++ Sbjct: 184 RSQSRYAASVWLSGGLLLAALVLSVVARGVLGRTLVRPLERAIHVFERMAAGDLATRMDE 243 Query: 239 HSQ----DETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQA 294 ++ DET +LM A+ M +LQ +VGQVR +D+IA+A+ +IA GN DLS RTEQQA Sbjct: 244 PTRAGRRDETARLMHAVASMQSSLQKMVGQVRTGSDSIASATKQIAAGNADLSQRTEQQA 303 Query: 295 GALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSN 354 +LEETAS+ME+LTS V+ NA+NA+QA LA +AS+VAV+GG+VV +VV+TM+ IN SS Sbjct: 304 SSLEETASSMEELTSIVKQNADNARQASTLAVNASDVAVKGGEVVGRVVETMAGINGSSK 363 Query: 355 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKV 414 KI DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK Sbjct: 364 KIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKE 423 Query: 415 LIDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQ 474 LI DSV RV +GS LVA+AG IDEVV +V++V+ ++ EISAA EQS GIE+VN+A+ Q Sbjct: 424 LISDSVDRVQNGSKLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQ 483 Query: 475 MDESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRL 512 MDE TQQNAALVEQAAAAA++++ QA L AVS FR+ Sbjct: 484 MDEVTQQNAALVEQAAAAAESLEAQAEALRQAVSAFRV 521 >RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust. Identities = 247/515 (47%), Positives = 342/515 (66%), Gaps = 5/515 (0%) Query: 1 MFSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAA 60 M ++LSIR RL + L LL G +GVI +R+++A + +Y ++L + S + + A Sbjct: 1 MLNRLSIRFRLNAALVLLGALLAIIGTIGVIGMRASDANIREIYSNQLASTSLVSK--AQ 58 Query: 61 LDAA--RNGISTSIVG-DSGDIDANMDKIEKALKANDAVVMKYQQTPLSSEERALLEKMI 117 L+AA R + ++ D+ D+ A +DK ++ +Y+ P+S++E L + Sbjct: 59 LNAAVIRTTLDRAVFHIDAADVPAVIDKAAAYRAKSEDAWKQYKGLPMSADEARLAADVD 118 Query: 118 AQRQKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVGREMH 177 A+R +GI+P ALR RD + V+ ++ A + L Q + + Sbjct: 119 AKRTTLFRDGIEPLVTALRARDAAAVDKAVMTVIPPMFVALSAAVDALDRNQAEQAKAAY 178 Query: 178 EQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQRIE 237 E A R Q L ++ A++ G++ A+ L RAIS PL R + ++ G+LT++I Sbjct: 179 EGAVTRSQNFLWLIIGAIVVGILSAVACAFGLDRAISVPLSRMLGSFGEISRGNLTEQIV 238 Query: 238 VHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGAL 297 V SQDE G L + LQ M L + +R +D+IA+A+ +IA GN+DLS RTE+QA +L Sbjct: 239 VTSQDEMGALTRGLQDMQRGLIRTIETMRGGSDSIASATKQIAAGNMDLSQRTEEQASSL 298 Query: 298 EETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNKIV 357 EETAS+ME+LTS V+ NA+NA+QA LA +AS++AV+GG+VV +VV+TM+ IN SS KI Sbjct: 299 EETASSMEELTSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVVETMAGINDSSKKIA 358 Query: 358 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLID 417 DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LI Sbjct: 359 DIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELIS 418 Query: 418 DSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQMDE 477 DSV RV +G+ LVA+AG IDEVV +V++V+ ++ EISAA EQS GIE+VN+A+ QMDE Sbjct: 419 DSVGRVENGTTLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDE 478 Query: 478 STQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRL 512 TQQNAALVE+AAAAAQ+++EQA L V+ FRL Sbjct: 479 VTQQNAALVEEAAAAAQSLEEQARLLRETVASFRL 513 >RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 356 bits (913), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 244/516 (47%), Positives = 335/516 (64%), Gaps = 14/516 (2%) Query: 5 LSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAALDAA 64 LSI++RL V+ LA+ L G LG++ +NA + Y + L + L A L A Sbjct: 4 LSIKARLALVLFVLAVFLAGVGALGLVGNLRSNAALKETYSNNLASTRALGLAEAKLAQA 63 Query: 65 RNGISTSIV-GDSGDIDANMDKIEKALKANDAVVMKYQQTPLSS-EERALLEKMIAQRQK 122 R + +I D + +I+ + ++ +Y P S+ EE + + QR Sbjct: 64 RTALDRAIFETDPAKTTDAISRIQAQIGNSEKAWAEYLNLPFSTPEEEKVAGEAKKQRDL 123 Query: 123 FVVEGIKPATEALRNRDFQGAIEL------YGGVMLKLYAEAHATLAQLMDLQRSVGREM 176 + + I A EAL+ D A +L Y + YA +L +Q V + Sbjct: 124 IIKDNIAAAVEALKRGDKDAARQLAVEQIPYN---FRTYASQSD---RLNAIQTEVSAAL 177 Query: 177 HEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQRI 236 +E +Q ++ L+ + + AGL +A +L RAIS PL + + +A+G+LT + Sbjct: 178 YEASQSFFKGLVWTFVIVIAAGLALAAGCYLILSRAISLPLAEMLVHFREIASGNLTTDV 237 Query: 237 EVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGA 296 V S+DE G LM+ LQQM D L+ V VR +++IA+A+ +IA GN +LS RTE+QA + Sbjct: 238 RVRSRDEMGVLMEGLQQMQDKLKATVLTVRHGSESIASATQQIAAGNTNLSQRTEEQASS 297 Query: 297 LEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNKI 356 LEETAS+ME+LTS V+ NA+NA+QA LA +AS +A++GG VV+ VV TM+ I++SS KI Sbjct: 298 LEETASSMEELTSIVKQNADNARQASTLAENASGIAMQGGAVVQDVVTTMAQISESSRKI 357 Query: 357 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLI 416 DII+VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEIK LI Sbjct: 358 TDIIAVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAGAAKEIKSLI 417 Query: 417 DDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQMD 476 +DS TRV SGS+LVA+AG T+DE+V +V++V+ ++ EISA EQS GIE++N A+TQMD Sbjct: 418 EDSATRVESGSSLVARAGKTMDEIVVAVKRVTDIMGEISAGSAEQSTGIEQINEAVTQMD 477 Query: 477 ESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRL 512 + TQQNAALVEQAAAAAQA++EQA L AVSVFR+ Sbjct: 478 DVTQQNAALVEQAAAAAQALEEQADELRRAVSVFRV 513