BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3847.p (570 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 368 e-101 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 351 3e-96 RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 351 3e-96 RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 345 2e-94 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 335 2e-91 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust. Identities = 238/538 (44%), Positives = 337/538 (62%), Gaps = 48/538 (8%) Query: 13 LAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIESLL 72 ++ + I VRL A + LL+ VG+ + +N +M + +R A +I++ Sbjct: 3 ISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKN-- 60 Query: 73 EGSN-NGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALLLD 131 G NGI + L ++ P++ K + A + ++ Y E+ L D Sbjct: 61 NGYKANGILSNLLLVTT----PEQK-------TKYMSDYAAIRQANAQAYGRLEKLLTTD 109 Query: 132 KFLGL-RQRF-----VQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKEL 185 + L +++F V+ A + + Q A ++ G M ++ + +D++ Sbjct: 110 QGKALFKEQFDARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKM--- 166 Query: 186 QIRVGRELYEKEQDDYARLMFIVSSAMVAG-------IVLAVLEAMLLI-------RAIS 231 V + E E D VS A G IVLAVL +L I R I+ Sbjct: 167 ---VDHQAGEMEHD--------VSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTIT 215 Query: 232 RPLGQAVEVAQAVAAGDLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITK 291 RP+ A+ +A+AVA G+L+ + V +QDE G+++ ALK M LH IVS VR TDTIT+ Sbjct: 216 RPINHAMHLAEAVAQGNLTHLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITR 275 Query: 292 AAHDIASGNQDLAARTEQQAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATR 351 A+ ++ASGN DL++RTEQQA+SLEETA+AM QLTSTVKQNADNA +A++LA++AS VAT+ Sbjct: 276 ASSEVASGNIDLSSRTEQQASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATK 335 Query: 352 GGDVVREVVDTMTSINQSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 411 GGD V E + TM++IN SS +IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 336 GGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 395 Query: 412 AAEVRSLAQRAAAAAREIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEI 471 A EVRSLAQR+AAAA+EIK LI+DSV V G+A V +AGQ + +VV ++ VT++V+EI Sbjct: 396 AGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEI 455 Query: 472 SAASQEQSNGIQEVDRAIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRL 529 SA+S+EQS+GI++++ AI MD +TQ+NA+LV+++ AA ALQ QA +L + F+L Sbjct: 456 SASSREQSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADMVSTFKL 513 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 351 bits (901), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 232/518 (44%), Positives = 329/518 (63%), Gaps = 15/518 (2%) Query: 16 LSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLV-AYAYLEEIESLLEG 74 ++IR+RL L M +AVL V GT GL+ +R +N ++++ YE +L A A E S+L Sbjct: 5 MTIRLRLALMMAGVAVLAVVIGTTGLLGMRHANTRVQATYEMQLAGAVALAESDASMLS- 63 Query: 75 SNNGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALLLDKFL 134 + ++ ++ + + L++ L K Y+A T +E L D+ Sbjct: 64 -----FRLVLDRAAMDIKAPSLGKTLERARMFLAKSDASWKRYRALPSTPDERKLADEAD 118 Query: 135 GLRQRFVQEGVQPAIAALR----KRSFQTADDIHGGAMRKIWEETRATLDQLKELQIRVG 190 LR F+++G Q + A++ +R+ QT + AM ++ + L +Q+ + Sbjct: 119 ALRTVFLRDGAQALMQAIQAGDAERTSQTVME----AMPALYRPLGDKVTALSRMQMEIA 174 Query: 191 RELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAAGDLS 250 R YE Q ++ L + ++ ++ GIV L L R+I+ PL +A+E A+ + GDL+ Sbjct: 175 RASYEAGQREHDGLSALTAALLLVGIVGGGLLTWSLRRSITVPLNRAIEQAEHITRGDLT 234 Query: 251 REVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAARTEQQ 310 + V DETG+++ AL+ M L +V VR +D I A IA+GN DL+ RTEQQ Sbjct: 235 HAIHVDRADETGRMLLALQRMQESLQGMVGQVRTGSDAIASATQQIAAGNADLSQRTEQQ 294 Query: 311 AASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSINQSS 370 A+SLEETAS+M QLT VKQNAD+A QA+ LA +AS++A +GG+VV VV+TM I+ SS Sbjct: 295 ASSLEETASSMEQLTGMVKQNADSARQASTLAVNASDIAVKGGEVVGRVVETMAGIHDSS 354 Query: 371 NRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAREIK 430 +I DIIGVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQR+A AA+EIK Sbjct: 355 RKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIK 414 Query: 431 DLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRAIV 490 LI DSV +V G+ LV +AG ++EVV +V++VT ++ EISAAS QS GI +V++A+ Sbjct: 415 TLISDSVGRVESGTTLVAEAGTVIDEVVVAVKRVTGIMGEISAASDAQSEGIAQVNQAVT 474 Query: 491 LMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFR 528 MD +TQQNAALV+QA AAA +LQ+QA L + FR Sbjct: 475 QMDEATQQNAALVEQAAAAAMSLQEQADGLRGTVAAFR 512 >RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 351 bits (901), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 228/525 (43%), Positives = 332/525 (63%), Gaps = 19/525 (3%) Query: 12 ILAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEE---- 67 +L +LSIR RL A+ L LL GT+G++ +RAS+ +R +Y ++L + + + + Sbjct: 1 MLNRLSIRFRLNAALVLLGALLAIIGTIGVIGMRASDANIREIYSNQLASTSLVSKAQLN 60 Query: 68 ---IESLLEGSNNGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTA 124 I + L+ + +D+++ + +DK K Y+ ++A Sbjct: 61 AAVIRTTLD------RAVFHIDAAD------VPAVIDKAAAYRAKSEDAWKQYKGLPMSA 108 Query: 125 EEALLLDKFLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKE 184 +EA L R ++G++P + ALR R D + ++ A +D L Sbjct: 109 DEARLAADVDAKRTTLFRDGIEPLVTALRARDAAAVDKAVMTVIPPMFVALSAAVDALDR 168 Query: 185 LQIRVGRELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAV 244 Q + YE ++++ A+V GI+ AV A L RAIS PL + + + Sbjct: 169 NQAEQAKAAYEGAVTRSQNFLWLIIGAIVVGILSAVACAFGLDRAISVPLSRMLGSFGEI 228 Query: 245 AAGDLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLA 304 + G+L+ +++V SQDE G + + L++M L + T+R +D+I A IA+GN DL+ Sbjct: 229 SRGNLTEQIVVTSQDEMGALTRGLQDMQRGLIRTIETMRGGSDSIASATKQIAAGNMDLS 288 Query: 305 ARTEQQAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMT 364 RTE+QA+SLEETAS+M +LTS VKQNADNA QA+ LA +AS++A +GG+VV VV+TM Sbjct: 289 QRTEEQASSLEETASSMEELTSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVVETMA 348 Query: 365 SINQSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAA 424 IN SS +I DIIGVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQR+A Sbjct: 349 GINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAG 408 Query: 425 AAREIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQE 484 AA+EIK+LI DSV +V G+ LV +AG ++EVV +V++VTD++ EISAAS EQS+GI++ Sbjct: 409 AAKEIKELISDSVGRVENGTTLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQ 468 Query: 485 VDRAIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRL 529 V++A+ MD TQQNAALV++A AAA +L++QA+ L + + FRL Sbjct: 469 VNQAVNQMDEVTQQNAALVEEAAAAAQSLEEQARLLRETVASFRL 513 >RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 345 bits (884), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 237/520 (45%), Positives = 330/520 (63%), Gaps = 10/520 (1%) Query: 12 ILAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIESL 71 +LA+L+IR RL+L + L +L + G GL+ +R +N Y ++ + L E + Sbjct: 1 MLARLTIRTRLVLTVSILFLLALLIGVAGLLGLRDANGAHEETYRNQFPSALALGESDLS 60 Query: 72 LEGSNNGIYGIITLDSSEGWNPDEID--QRLDKIEKRLGTVAPVIKSYQATYLTAEEALL 129 L + LD + + P++ D Q LD+ E+ + K Y A EE L Sbjct: 61 LTRARTA------LDKAMLY-PEDKDAMQLLDRTEELITGSDAAWKKYLALPHGDEETRL 113 Query: 130 LDKFLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKELQIRV 189 K +G ++ ++ I ALR AD I + K + E L + Q+ Sbjct: 114 -SKEVGTKREAAAGSLRDIIKALRASDRAAADAIMDKRVSKSFREANDASQALGKQQLTF 172 Query: 190 GRELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAAGDL 249 + ++ Q YAR+ +V +A+V +V++ A LL+RAI PL + +AAGDL Sbjct: 173 SKANFDDSQQAYARIRNLVIAAIVLALVVSAGCAWLLLRAIVGPLNATLAQFDRIAAGDL 232 Query: 250 SREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAARTEQ 309 ++ V + +DE G +++ L M A L V VR +++I A IA+GN DL+ RTE Sbjct: 233 TQPVRIDRRDEMGHLLEGLARMQAALTDTVRRVRHGSESIGAATKQIAAGNADLSQRTEG 292 Query: 310 QAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSINQS 369 QA+SLEETAS+M ++TS V+QNADNA QA+QLA SAS VA++GG VV +VV TM I+ S Sbjct: 293 QASSLEETASSMEEMTSIVRQNADNARQASQLADSASAVASQGGAVVTDVVATMREISAS 352 Query: 370 SNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAREI 429 S + +IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQR+AAAA+EI Sbjct: 353 SRTVSEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEI 412 Query: 430 KDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRAI 489 K++I+ S+ KV GS L QAG TME +V S+R+VTD++ EI+AAS EQS+GI++V++A+ Sbjct: 413 KEMIEASLAKVDTGSKLAEQAGSTMENIVTSIRRVTDIMGEIAAASSEQSSGIEQVNKAV 472 Query: 490 VLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRL 529 LMD +TQQNAALV+QA AAA +L++QAQ L +A+ FRL Sbjct: 473 TLMDEATQQNAALVEQAAAAAESLEEQAQALNEAIAAFRL 512 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 335 bits (859), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 230/519 (44%), Positives = 335/519 (64%), Gaps = 13/519 (2%) Query: 17 SIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLY-EDRLVAYAYLEEIESLLEGS 75 SIR RL + + AV++ + G G+ RA+N +R++Y ED + ++ L + + Sbjct: 10 SIRTRLTVLVAAFAVMVAAVGGTGIATGRATNADLRAVYLED-------AKGLDLLAKDT 62 Query: 76 NNGIYGIITLDSSEG-WNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALLLDKFL 134 N ++ I L + + +P+E+ + L + ++ + + L Sbjct: 63 ANLLWARIHLTNFDSVSSPEELAKLLKDAHAMVDAANAAWAAFTQLPIPDADRAQLQAAD 122 Query: 135 GLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKELQIRVGRELY 194 R RFV+ ++PAI AL + T D++ + +++ A L L + + G+ + Sbjct: 123 AARARFVKTALEPAITALERSDLTTYRDLNTTQVPQLFAVYDAALQPLVKARFAYGQARF 182 Query: 195 EKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAAGDLSREV- 253 ++ Q YA +++ ++A +VL+V+ +L R + RPL +A+ V + +AAGDL+ + Sbjct: 183 DRSQSRYAASVWLSGGLLLAALVLSVVARGVLGRTLVRPLERAIHVFERMAAGDLATRMD 242 Query: 254 ---MVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAARTEQQ 310 +DET ++M A+ M + L +V VR +D+I A IA+GN DL+ RTEQQ Sbjct: 243 EPTRAGRRDETARLMHAVASMQSSLQKMVGQVRTGSDSIASATKQIAAGNADLSQRTEQQ 302 Query: 311 AASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSINQSS 370 A+SLEETAS+M +LTS VKQNADNA QA+ LA +AS+VA +GG+VV VV+TM IN SS Sbjct: 303 ASSLEETASSMEELTSIVKQNADNARQASTLAVNASDVAVKGGEVVGRVVETMAGINGSS 362 Query: 371 NRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAREIK 430 +I DIIGVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQR+A AA+EIK Sbjct: 363 KKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIK 422 Query: 431 DLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRAIV 490 +LI DSVD+V GS LV +AG ++EVV +V++VTD++ EISAAS EQS+GI++V++A+ Sbjct: 423 ELISDSVDRVQNGSKLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVN 482 Query: 491 LMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRL 529 MD TQQNAALV+QA AAA +L+ QA+ L QA+ FR+ Sbjct: 483 QMDEVTQQNAALVEQAAAAAESLEAQAEALRQAVSAFRV 521