BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3842.p         (173 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HI0250 [L] COG0629 Single-stranded DNA-binding protein Hin Haemo...   190   1e-48
PM1950 [L] COG0629 Single-stranded DNA-binding protein Pmu Paste...   187   1e-47
NMB1460 [L] COG0629 Single-stranded DNA-binding protein Nme Neis...   181   7e-46
NMA1672 [L] COG0629 Single-stranded DNA-binding protein NmA Neis...   181   7e-46
VC0397 [L] COG0629 Single-stranded DNA-binding protein Vch Vibri...   179   3e-45

>HI0250 [L] COG0629 Single-stranded DNA-binding protein Hin Haemophilus
           influenzae
          Length = 168

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 121/174 (69%), Gaps = 7/174 (4%)

Query: 1   MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60
           MA +NKVIIVG+LG DPE R MPNG+AV NI+VAT+ESW D+NTGE++E+TEWHRI FYR
Sbjct: 1   MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYR 60

Query: 61  KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGGRQGAGGGGGM 120
           + AEI G+YL+KGSQ+YVEGRL+TRKWQD+ G +RYTTEI  D MQMLGGR    GG G 
Sbjct: 61  RQAEICGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGN 120

Query: 121 DEGSYGGGGGGSYGGGAPRQSAGGGAAGGGAPRQQPAQRPAPNFSD-MDDDIPF 173
           D    GG    SY     RQ+  G +     P  Q A   A    D  DDDIPF
Sbjct: 121 D---MGGAPQSSY---QARQTNNGNSYQSSRPAPQQAAPQAEPPMDGFDDDIPF 168


>PM1950 [L] COG0629 Single-stranded DNA-binding protein Pmu Pasteurella
           multocida
          Length = 166

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 121/179 (67%), Gaps = 19/179 (10%)

Query: 1   MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60
           MA VNKVIIVGNLG DPE R MPNGEAV NI+VAT+ESW DKNT E++E+TEWHRI FYR
Sbjct: 1   MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYR 60

Query: 61  KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGGRQGAGGGGGM 120
           + AE+AG+YL+KGS++YVEGRL+TRKWQD+ G +RYTTEI  D +QML  R      GG 
Sbjct: 61  RQAEVAGEYLRKGSKVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGY 120

Query: 121 DEGSYGGGGGGSYGGGAPRQSAGGGAAGGGAPRQQPAQRPAP-NFSDMD-----DDIPF 173
              +            AP+ +A  G+ G    R  PA +PAP N   MD     D+IPF
Sbjct: 121 APQT-----------AAPQYNAPTGSYGAQPSR--PATKPAPQNEPPMDMGFEEDNIPF 166


>NMB1460 [L] COG0629 Single-stranded DNA-binding protein Nme Neisseria
           meningitidis MC58
          Length = 174

 Score =  181 bits (459), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 117/175 (66%), Gaps = 6/175 (3%)

Query: 3   SVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYRKL 62
           S+NKVI++G LGRDPE RYMPNGEAV N +VAT+E+W D+N G++ E TEWH IT YRKL
Sbjct: 2   SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRN-GQRVERTEWHNITMYRKL 60

Query: 63  AEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGGRQGAGGGGGMDE 122
           AEIAGQYLKKG  +Y+EGR+Q+RK+Q K+G+ER   +I+A+ M+MLGGR    GG   +E
Sbjct: 61  AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEE 120

Query: 123 GSYGGGGGGSYGGGAPRQSAGGGAA----GGGAPRQQPAQRPAPNFSDMDDDIPF 173
           G               RQ A    +       APR+QP    AP   D+DDDIPF
Sbjct: 121 GYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVPAAAP-VEDIDDDIPF 174


>NMA1672 [L] COG0629 Single-stranded DNA-binding protein NmA Neisseria
           meningitidis Z2491
          Length = 174

 Score =  181 bits (459), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 117/175 (66%), Gaps = 6/175 (3%)

Query: 3   SVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYRKL 62
           S+NKVI++G LGRDPE RYMPNGEAV N +VAT+E+W D+N G++ E TEWH IT YRKL
Sbjct: 2   SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRN-GQRVERTEWHNITMYRKL 60

Query: 63  AEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGGRQGAGGGGGMDE 122
           AEIAGQYLKKG  +Y+EGR+Q+RK+Q K+G+ER   +I+A+ M+MLGGR    GG   +E
Sbjct: 61  AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEE 120

Query: 123 GSYGGGGGGSYGGGAPRQSAGGGAA----GGGAPRQQPAQRPAPNFSDMDDDIPF 173
           G               RQ A    +       APR+QP    AP   D+DDDIPF
Sbjct: 121 GYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVPAAAP-VEDIDDDIPF 174


>VC0397 [L] COG0629 Single-stranded DNA-binding protein Vch Vibrio cholerae
          Length = 177

 Score =  179 bits (454), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 124/192 (64%), Gaps = 34/192 (17%)

Query: 1   MAS--VNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITF 58
           MAS  VNKVI++GNLG+DPE RYMP+G AV NI +AT+E+W+DK TGE+KE TEWHR+T 
Sbjct: 1   MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTL 60

Query: 59  YRKLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIAD----TMQMLGGRQGA 114
           Y KLAE+AG+YL+KGSQ+Y+EG+LQTRKWQD+ G +RY+TE++       MQMLGGR   
Sbjct: 61  YGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQ 120

Query: 115 GG---GGGMDEGSYGGGGGGSYGGGAPRQSAGGGAAGGGAPRQQPAQRPAP-NFS----- 165
           GG    GGM+                P Q    G     A + QP Q+ AP  +S     
Sbjct: 121 GGMPAQGGMN---------------VPAQQGSWGQPQQPAKQHQPMQQSAPQQYSQPQYN 165

Query: 166 ----DMDDDIPF 173
               D DDDIPF
Sbjct: 166 EPPMDFDDDIPF 177