BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3834.p (251 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0314 [TK] COG0745 Response regulators consisting of a CheY-li... 362 e-100 CAC3220 [TK] COG0745 Response regulators consisting of a CheY-li... 157 1e-38 BH1580 [TK] COG0745 Response regulators consisting of a CheY-lik... 155 7e-38 lin2062 [TK] COG0745 Response regulators consisting of a CheY-li... 150 3e-36 all4727 [TK] COG0745 Response regulators consisting of a CheY-li... 149 5e-36 >RSp0314 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 256 Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/237 (75%), Positives = 203/237 (85%), Gaps = 1/237 (0%) Query: 11 PSSGEPAPASGALILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVL 70 P SG A ++ ALILIAED PEIA+ILAAYLARSG+RSVHAADG +ALELHLSLKPDLVL Sbjct: 17 PPSGA-AQSAQALILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVL 75 Query: 71 LDIQMPQVNGWQVLSQIRQRDNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVA 130 LD+QMP V+GW+ LS+IR R +TPVIMLTALDQD+DKL GLRIGADDYVVKPFNPAEVVA Sbjct: 76 LDVQMPHVDGWKALSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVA 135 Query: 131 RVEAVLRRSQPREDREERRILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLA 190 R +AVLRRS R ++R+LRV PF ID + HEA ++ H L LTLTEFKLLAQLA Sbjct: 136 RTQAVLRRSMSGTGRRDQRVLRVAPFQIDLDNHEATVQVGKQRHALALTLTEFKLLAQLA 195 Query: 191 RAPRRVFSRAELLASCLPEGDTLERTVDSHVSKLRKKLEDLGIAGIPVSIRGVGYRF 247 RAP+RVFSRAELLA+CLPEGDTLERTVDSH+SKLRKKLEDLG+ G+PV +RGVGYR Sbjct: 196 RAPKRVFSRAELLAACLPEGDTLERTVDSHISKLRKKLEDLGVNGMPVGVRGVGYRL 252 >CAC3220 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Cac Clostridium acetobutylicum Length = 228 Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/233 (40%), Positives = 134/233 (57%), Gaps = 12/233 (5%) Query: 19 ASGALILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQV 78 +S A +LI +D I E++ YL SG + + DG A + + KPD+VLLDI +PQ Sbjct: 3 SSLAKVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIMLPQE 62 Query: 79 NGWQVLSQIRQRDNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRR 138 +G VL IR+ DNTPVIMLTA + DK+ L +GADDY+VKPF P E+VARV+AVLRR Sbjct: 63 DGIDVLKWIRKADNTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRR 122 Query: 139 SQPREDREERRILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFS 198 + + ++L ID + + + + + EF+LL LA +VF+ Sbjct: 123 ANS--ENVSSQVLNFNGLKIDMGSYTVIYNEKDIK----MPPKEFELLYYLANNKNKVFT 176 Query: 199 RAELLASCLPE---GDTLERTVDSHVSKLRKKLEDLGIAGIPVSIRGVGYRFQ 248 R +LL GD+ RTVD HV +LR+KL + G ++ GVGY+F+ Sbjct: 177 REQLLCEVWGYDYPGDS--RTVDVHVKRLREKLHE-GNGWDIQTVWGVGYKFE 226 >BH1580 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Bha Bacillus halodurans Length = 238 Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 141/236 (59%), Gaps = 15/236 (6%) Query: 22 ALILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGW 81 A IL+ +D I +L YL R A+DG +ALE L+ D++LLD+ MP+++G Sbjct: 5 AKILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPEMDGI 64 Query: 82 QVLSQIRQRDNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQP 141 +V ++R++ TP+IMLTA ++ +++ G +G DDY+VKPF+P EVV RV+A+LRRS Sbjct: 65 EVCQKLRKQKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSS 124 Query: 142 ----REDREERRILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVF 197 + D + + +L P ID + H + ++ LT E++LL LA++P +VF Sbjct: 125 TKFLQTDTQAKDVLVFPHLSIDNDAHRVTVADQEIN----LTPKEYELLYYLAQSPDKVF 180 Query: 198 SRAELLASCLPE---GDTLERTVDSHVSKLRKKLEDLG--IAGIPVSIRGVGYRFQ 248 SR +LL GD RTVD+H+ +LR+KL + A + ++ GVGY+F+ Sbjct: 181 SREQLLKDVWNYDFFGDL--RTVDTHIKRLREKLNRVSPQAASMISTVWGVGYKFE 234 >lin2062 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Lin Listeria innocua Length = 238 Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 139/236 (58%), Gaps = 19/236 (8%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQV 83 +L+ +D I +L YL R R A+DG +AL + L+ +++LLD+ MP +G +V Sbjct: 7 VLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIEV 66 Query: 84 LSQIRQRDNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQPRE 143 ++R+ +TPV+MLTA ++ +++ G +GADDY+VKPF+P EVV RV+AVLRR+ ++ Sbjct: 67 CRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRA--KQ 124 Query: 144 DREER------RILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVF 197 EE I+ P ID E H + + + LT E+ LL LA++P +VF Sbjct: 125 SSEEAAGGTPGDIITFPHLKIDNEAHRVIVD----GKEIGLTPKEYDLLYYLAKSPDKVF 180 Query: 198 SRAELLASCLPE---GDTLERTVDSHVSKLRKKLEDLG--IAGIPVSIRGVGYRFQ 248 R LL GD RT+D+HV +LR+KL D+ A + V++ G+GY+F+ Sbjct: 181 DRESLLKEVWRYEFFGDL--RTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234 >all4727 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Nos Nostoc sp. PCC 7120 Length = 238 Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 142/235 (60%), Gaps = 16/235 (6%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQV 83 ILI ED EIA+++ L + G + DG AL++ PDL++LD+ +P ++G +V Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIPGLDGLEV 62 Query: 84 LSQIRQR---DNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQ 140 ++IRQ+ + ++MLTA +++D++ GL GADDY+VKPF+P E+VARV A+LRRS Sbjct: 63 CARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRRSL 122 Query: 141 PREDREERRILRVPPFVIDFEQHEAVAEIEGVSH---TLVLTLTEFKLLAQLARAPRRVF 197 + + + + R F++D +Q A +I+ SH L LT EF LL+ P RV+ Sbjct: 123 RQGGQNQ--VNRTQHFIVDLDQRTASRQID--SHQPEALDLTTLEFNLLSTFVSNPGRVW 178 Query: 198 SRAELLASCLPEGDTL---ERTVDSHVSKLRKKLE-DLGIAGIPVSIRGVGYRFQ 248 +R +L+ GD ER VD+HV++LRKK+E D ++ GVGY+F+ Sbjct: 179 NRTQLIDKLW--GDNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFE 231