BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3832.p         (57 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TVN0744 [C] COG2142 Succinate dehydrogenase, hydrophobic anchor ...    29   2.9  
RC0602 Non COG                                                         29   3.3  
AGc2735 [C] COG3038 Cytochrome B561 Atu Agrobacterium tumefacien...    28   7.5  
aq_1049 [C] COG2864 Cytochrome b subunit of formate dehydrogenas...    27   8.8  

>TVN0744 [C] COG2142 Succinate dehydrogenase, hydrophobic anchor subunit
          Tvo Thermoplasma volcanium
          Length = 123

 Score = 28.9 bits (63), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 3  NTAERFDSVAKQFH--WTMAAAFILAYIVVYYGI 34
          N    F SV  Q H  W +A   I  YIV Y+GI
Sbjct: 41 NPVALFGSVVNQLHNPWWLAFFLIFVYIVTYHGI 74


>RC0602 Non COG
          Length = 102

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 1  LENTAERFDSVAKQFHWTMAAAFILAYIV 29
          L NT   +  +AK FHW M+   I+  +V
Sbjct: 7  LTNTENSYGLIAKLFHWIMSIIVIVMLVV 35


>AGc2735 [C] COG3038 Cytochrome B561 Atu Agrobacterium tumefaciens strain
          C58 (Cereon)
          Length = 214

 Score = 27.7 bits (60), Expect = 7.5,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 3  NTAERFDSVAKQFHWTMAAAFILAYIVVYYGICFIDPETSIKPAL 47
          NT   F  VA  FHWT+A  F     V    + ++    SI P L
Sbjct: 20 NTPSSFGVVAIAFHWTIAVLF-----VAQLALGYLMSRDSIDPVL 59


>aq_1049 [C] COG2864 Cytochrome b subunit of formate dehydrogenase Aae
          Aquifex aeolicus
          Length = 211

 Score = 27.3 bits (59), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 2  ENTAERFDSVAKQFHWTMAAAFILAYI 28
          E   ERF ++ +  HWT A AF+  ++
Sbjct: 10 EEQIERFSALDRILHWTTALAFLYCFL 36