BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3803.p         (140 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0457 [S] COG3536 Uncharacterized protein conserved in bacteri...   173   1e-43
BMEI1018 [S] COG3536 Uncharacterized protein conserved in bacter...   120   7e-28
NMA0955 [S] COG3536 Uncharacterized protein conserved in bacteri...   115   2e-26
NMB0742 [S] COG3536 Uncharacterized protein conserved in bacteri...   115   3e-26
mll0540 Non COG                                                       114   7e-26

>RSc0457 [S] COG3536 Uncharacterized protein conserved in bacteria Rso
           Ralstonia solanacearum
          Length = 138

 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/135 (62%), Positives = 98/135 (72%), Gaps = 4/135 (2%)

Query: 6   SPIPVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVYSPSAEVRGHGPGQEVLQTGKREVE 65
           +P P    V   SRV+E+ F DG  F LPFE +RV SPSAEV+GHGPGQEVLQTGKREV 
Sbjct: 8   TPQPTGITVHTQSRVLEIVFADGKQFRLPFEYLRVLSPSAEVQGHGPGQEVLQTGKREVG 67

Query: 66  IHGIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGLDQAALWEAYLQKLEAAGFTRDSGRD 125
           I G+EPVGNY ++PLFSDGH SGI+ W YLY+LG +Q ALW+AYL +L AAG  RD+   
Sbjct: 68  IVGVEPVGNYAIRPLFSDGHDSGIYDWAYLYRLGAEQDALWQAYLDRLAAAGLDRDA--- 124

Query: 126 HQAEAGAGHGCGHSH 140
                GAGH CGH H
Sbjct: 125 -PMAPGAGHACGHGH 138


>BMEI1018 [S] COG3536 Uncharacterized protein conserved in bacteria Bme
           Brucella melitensis
          Length = 119

 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 75/113 (66%)

Query: 9   PVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVYSPSAEVRGHGPGQEVLQTGKREVEIHG 68
           P   +V +  +++ V FD+G  F L  EL+RV SPSAEV+GH P Q V   GKR VEI  
Sbjct: 6   PTQLRVSRDRKLLSVAFDNGQKFDLTAELLRVLSPSAEVQGHSPEQRVTVGGKRNVEIMR 65

Query: 69  IEPVGNYGVKPLFSDGHASGIFTWDYLYQLGLDQAALWEAYLQKLEAAGFTRD 121
           I+P+GNY V+  F D H +G+F+W YL++LG+++  LW+ YL +L   G TRD
Sbjct: 66  IDPIGNYAVRITFDDMHDTGLFSWTYLHKLGVEKDTLWQNYLDELAKKGLTRD 118


>NMA0955 [S] COG3536 Uncharacterized protein conserved in bacteria NmA
           Neisseria meningitidis Z2491
          Length = 130

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 1/113 (0%)

Query: 8   IPVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVYSPSAEVRGHGPGQEVLQTGKREVEIH 67
           IPV  ++ K   V+ + + D    +LP E +RVYSPSAEVRGHG GQ+VLQTGK +V+I 
Sbjct: 12  IPVEIRLLKNRTVLVLTYGDEPK-NLPAEFLRVYSPSAEVRGHGVGQDVLQTGKADVQIT 70

Query: 68  GIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGLDQAALWEAYLQKLEAAGFTR 120
            ++PVG Y +K  FSDGH SG++ W YL++L     A+W+ YL KL AAG +R
Sbjct: 71  DLQPVGQYALKISFSDGHDSGLYDWAYLHRLAYGYDAMWQEYLDKLAAAGASR 123


>NMB0742 [S] COG3536 Uncharacterized protein conserved in bacteria Nme
           Neisseria meningitidis MC58
          Length = 119

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)

Query: 6   SPIPVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVYSPSAEVRGHGPGQEVLQTGKREVE 65
           + IPV  ++ K   V+ + + D    +LP E +RVYSPSAEVRGHG GQ+VLQTGK +V+
Sbjct: 2   NNIPVEIRLLKNRTVLVLTYGDEPK-NLPAEFLRVYSPSAEVRGHGVGQDVLQTGKADVQ 60

Query: 66  IHGIEPVGNYGVKPLFSDGHASGIFTWDYLYQLGLDQAALWEAYLQKLEAAGFTR 120
           I  ++PVG Y +K  FSDGH SG++ W YL++L     A+W+ YL KL AAG +R
Sbjct: 61  IADLQPVGQYALKISFSDGHDSGLYDWAYLHRLAYGYDAMWQEYLDKLAAAGASR 115


>mll0540 Non COG
          Length = 117

 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 71/113 (62%)

Query: 9   PVSFKVRKLSRVVEVEFDDGVMFSLPFELMRVYSPSAEVRGHGPGQEVLQTGKREVEIHG 68
           P   +V K  +++ V F +   F LP EL+RV SPSAEV+GH P Q V   GKR V I  
Sbjct: 4   PKELRVSKDRKLLSVTFPNHQPFELPAELLRVASPSAEVQGHSPDQRVTVPGKRNVAILK 63

Query: 69  IEPVGNYGVKPLFSDGHASGIFTWDYLYQLGLDQAALWEAYLQKLEAAGFTRD 121
           IEPVGNY V+  F D H +GIFTW+YL+ LG ++   W AYL +L   G +RD
Sbjct: 64  IEPVGNYAVRITFDDFHDTGIFTWNYLHTLGHEKDERWNAYLAELAEKGLSRD 116