BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3788.p         (145 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1359 [T] COG0589 Universal stress protein UspA and related nu...   142   3e-34
RSp1159 [T] COG0589 Universal stress protein UspA and related nu...   100   1e-21
AGc878 [T] COG0589 Universal stress protein UspA and related nuc...    92   3e-19
BMEII0245 [T] COG0589 Universal stress protein UspA and related ...    91   6e-19
BMEI0102 [T] COG0589 Universal stress protein UspA and related n...    90   2e-18

>RSc1359 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 168

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 95/145 (65%), Gaps = 1/145 (0%)

Query: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60
           MF+ IL+PTDGSE S KA+A A+D+AK  GARL   T  E YP++P +E  +   P  ++
Sbjct: 25  MFQHILIPTDGSELSRKAVAGALDFAKTLGARLTAYTCLEEYPYTPFSEIVVET-PQAFK 83

Query: 61  ENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHGRSG 120
           E V+  A   +K + D A AAG+ C  ++     P   II AA+ H CD IFMASHGR G
Sbjct: 84  ERVEAQARVVLKDVEDTARAAGIDCDTDMSCFAVPYMGIIDAAERHGCDVIFMASHGRRG 143

Query: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145
           L+ + LGS+TQKVLTH+ IPV+V R
Sbjct: 144 LAGLLLGSETQKVLTHTAIPVIVYR 168


>RSp1159 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Rso Ralstonia solanacearum
          Length = 146

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 1/146 (0%)

Query: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60
           MF  IL+PTDGS +  KAI  A+  A  +G RL   T  E +P    +  +     + Y 
Sbjct: 1   MFTHILLPTDGSSQCTKAIDGALKLAHAAGCRLTAYTCIEDFPSMAYSGGAGECPYSHYM 60

Query: 61  ENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHG-RS 119
           E V+  A   I +I + A   GV   ++V     P   I+ AA+ H+CD IFMASHG RS
Sbjct: 61  EQVQGYAKDCIDRIAERAREEGVEFDSDVTQFAEPYLGILDAARRHACDVIFMASHGHRS 120

Query: 120 GLSRIFLGSKTQKVLTHSTIPVLVLR 145
              R+ +G++T+KVLT++ IPV+V R
Sbjct: 121 LTGRLLIGNETRKVLTYAHIPVVVYR 146


>AGc878 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 160

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/146 (41%), Positives = 81/146 (55%), Gaps = 3/146 (2%)

Query: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60
           MFK IL+PTDGS  +  AI      A+ +GA++  +TV+EP  F  +A     I     E
Sbjct: 16  MFKHILIPTDGSPLAQIAIDQGFALAREAGAKVTVVTVSEP--FHVIASDVEDIAAIAEE 73

Query: 61  ENVKTLANQYIKKITDA-AAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHGRS 119
           E  +    +++ + T A AAA G+ C+A +  +  PDE II+ A    CD I MASH R 
Sbjct: 74  EFHRCEEAEHLLRDTQAHAAAMGLDCEALLARAGRPDEAIIEIADRTGCDLIAMASHRRR 133

Query: 120 GLSRIFLGSKTQKVLTHSTIPVLVLR 145
               + LGS T KVL +S IPVLV R
Sbjct: 134 SFIEMLLGSVTAKVLKNSKIPVLVYR 159


>BMEII0245 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Bme Brucella melitensis
          Length = 148

 Score = 91.3 bits (225), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 3/148 (2%)

Query: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYP--FSPLAESSMAIDP-A 57
           M+K IL+ TDGS  +DK IA  +  A+   AR+  +TVAEP     + +A      DP +
Sbjct: 1   MYKHILIATDGSALADKGIAQGLSLAEQLSARVTVLTVAEPMGGRAAHVAMLGGVRDPVS 60

Query: 58  LYEENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHG 117
           LY++ +     +    I   A+  G+  +    +  +P + I++ A    CD I M+SHG
Sbjct: 61  LYDQRIDADMKERFAPIERRASEHGIAFELLHEVDVSPAKAIVRIAHLKQCDVIVMSSHG 120

Query: 118 RSGLSRIFLGSKTQKVLTHSTIPVLVLR 145
             G   + LGS+T+ VL H+TIP+LV+R
Sbjct: 121 HYGFRSLLLGSQTKDVLMHTTIPILVIR 148


>BMEI0102 [T] COG0589 Universal stress protein UspA and related
           nucleotide-binding proteins Bme Brucella melitensis
          Length = 149

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 4/149 (2%)

Query: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYP-FSPLAESSMAIDPAL- 58
           M+K IL+ TDGSE +DK +   V  AK +GA ++ ++V E  P +  +  +  A  PA  
Sbjct: 1   MYKRILIATDGSELADKGVKQGVTLAKETGAGVVFVSVTELLPSYGIVVAAEWASSPAAF 60

Query: 59  --YEENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASH 116
             Y E +   A   + K    A AAG+  +   V + +  + I++AA+   CD I +ASH
Sbjct: 61  QEYREAISKAAADILHKAKAEAEAAGINAETVHVENQSAAQGIVEAAKAKDCDLIVIASH 120

Query: 117 GRSGLSRIFLGSKTQKVLTHSTIPVLVLR 145
           GR G++++ LGS+  +VL+ ST+PVLV++
Sbjct: 121 GRRGVNKLLLGSQAAEVLSLSTVPVLVIK 149