BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3781.p (268 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transd... 239 4e-63 AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transd... 185 7e-47 YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transd... 185 1e-46 SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transd... 179 5e-45 RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transd... 179 7e-45 >SMa0506 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 265 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 115/244 (47%), Positives = 163/244 (66%) Query: 22 AQAAQADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIV 81 A A A +L DI ARKKV++ +DL PPFG+TN +++P G DV+ A+LLAKDLGVELE+V Sbjct: 22 AATASASSLDDIIARKKVMIGVDLSVPPFGITNEEMQPDGLDVDVAKLLAKDLGVELELV 81 Query: 82 QVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKTENIKSINDL 141 VTG +RIP L TGK D V++SF I ER VAF+ PYG + ++ APK IKS+ DL Sbjct: 82 PVTGQSRIPSLQTGKVDFVVASFGIYTERALSVAFSNPYGGHRSIIIAPKEATIKSLADL 141 Query: 142 VGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAILSGQVDALCTPNSLASAIAK 201 GKRV V RG + +L+ +G +VRFDDD+T A++SGQVDA+ T N +A+ + + Sbjct: 142 AGKRVGVPRGTAHEKILSAANVEGMELVRFDDDSTTLNALVSGQVDAIGTVNYIAAQLQE 201 Query: 202 QNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPAIYQQWVGSPMPD 261 + P + E K Y +GLR+ +P L WLN + + ++G+L AIY++W+ +P+P+ Sbjct: 202 RYPDRGFEEKTTYLQSFYGVGLRRNDPDLLHWLNTVLFVHKQSGELGAIYEKWMKTPIPE 261 Query: 262 LAQF 265 L F Sbjct: 262 LPSF 265 >AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 261 Score = 185 bits (470), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 103/250 (41%), Positives = 148/250 (59%), Gaps = 3/250 (1%) Query: 11 AAAVALGLACLAQAAQADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLL 70 A +V LG + AA ADAL DI +R + VA+ PPFG + PQG D++ A L+ Sbjct: 12 AVSVTLGFS---PAAFADALGDISSRGTIRVAVPQDFPPFGSVGTDMAPQGYDIDVANLI 68 Query: 71 AKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAP 130 + LGV++E+V VT NR+P+L T K D+VISS P+R+KV+ F+ Y V AP Sbjct: 69 GEKLGVKVELVPVTSANRVPYLQTNKVDLVISSLGKNPDREKVIDFSTAYAPFFNGVFAP 128 Query: 131 KTENIKSINDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAILSGQVDALC 190 + + DL GK + V RG ++D LT +AP T I R++D+ +A L+GQV+A+ Sbjct: 129 DSVTVAKAEDLSGKTIGVTRGAVEDLELTKVAPADTTIKRYEDNNGTISAFLAGQVEAVA 188 Query: 191 TPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPAI 250 T N +A+AI +NP K E KF IK+ P IGL K +PAL + +N I +G L I Sbjct: 189 TGNVVAAAILAKNPPKRPELKFLIKNSPCYIGLNKEQPALLEKVNAIIATAKTDGSLNTI 248 Query: 251 YQQWVGSPMP 260 Q+W+ + +P Sbjct: 249 AQKWLKTDLP 258 >YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ype Yersinia pestis Length = 262 Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 145/239 (60%) Query: 22 AQAAQADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIV 81 A A AD L I+ R + VA+ PPFG L+PQG D++ A+ LA + ++L++V Sbjct: 19 APAVLADQLEKIQQRGVLRVAVPQDFPPFGSVGTDLQPQGYDIDMAQYLADKMKLKLQLV 78 Query: 82 QVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKTENIKSINDL 141 VT NR+P+L T K D+VISS PER+K +AF++ Y V K + +K L Sbjct: 79 SVTSANRVPYLQTDKVDLVISSLGKNPEREKAIAFSRAYAPFFLGVFGAKDDELKQPEQL 138 Query: 142 VGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAILSGQVDALCTPNSLASAIAK 201 GK + V RG ++D +L+ IAPK I R++D+ T +A LSGQV+ L T N + SA+A+ Sbjct: 139 AGKTIGVTRGAVEDMVLSEIAPKAAQIRRYEDNNTTLSAYLSGQVNYLATGNLVISALAR 198 Query: 202 QNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPAIYQQWVGSPMP 260 QNP + KF +KD P IGLR+GEPAL+ ++ I L++ L + ++W+ +P+P Sbjct: 199 QNPKQAPVAKFMLKDSPCYIGLRQGEPALKAKVDALIGDALQDNTLNGLSEKWLKAPLP 257 >SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 271 Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 100/262 (38%), Positives = 150/262 (57%), Gaps = 4/262 (1%) Query: 4 LLSFIRKAAAVALG---LACLAQAAQADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQ 60 L++ R+ A LG +A L A A + IK+ V V + + PPFG+ +A +P Sbjct: 6 LMNISRRIAISVLGAAIVAGLVAPAAAQTVETIKSAGTVKVGMLVDFPPFGIMDANNQPD 65 Query: 61 GSDVETARLLAKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPY 120 G D + A+LLAK+LGVE+ IV VTGPNRIP+L + + D++++S IT ER K V F+QPY Sbjct: 66 GYDADVAKLLAKELGVEVTIVPVTGPNRIPYLQSNQVDLLVASLGITEERAKNVDFSQPY 125 Query: 121 GASQFVVAAPKTENIKSINDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAA 180 V + DL GK + V R + QD+ T IAP+ NI RFDDDA+ A Sbjct: 126 AGISIGVFGAADLAVTKPEDLAGKTIGVARASTQDTATTKIAPQDANIQRFDDDASAVQA 185 Query: 181 ILSGQVDALCTPNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITA 240 +LSGQV+ + N +A+ I P + K + I +RKG + K++N ++ Sbjct: 186 LLSGQVELIGVSNVVAAQIEAAAPGR-FNQKLQLSQQVQGIAVRKGSSEMLKFVNGFLDK 244 Query: 241 NLKNGKLPAIYQQWVGSPMPDL 262 +G+L AI+++W+GSP+P+ Sbjct: 245 VKADGQLNAIHEKWLGSPLPEF 266 >RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 267 Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 142/239 (59%) Query: 22 AQAAQADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIV 81 + A ADALA+I+ + VAI PPFG L+ QG D++ A L+AK+LGV+ E+V Sbjct: 26 GRPAHADALANIQKAGVIRVAIPNDFPPFGSLGTDLKLQGYDIDMANLVAKELGVKAELV 85 Query: 82 QVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKTENIKSINDL 141 VT NRIPFL TGK D+VISS ER KV+ FTQ Y V PK +IK+ DL Sbjct: 86 PVTSTNRIPFLTTGKVDVVISSLGKNAERAKVIDFTQAYAPFPKSVYGPKDVSIKTPADL 145 Query: 142 VGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAILSGQVDALCTPNSLASAIAK 201 GK + V RG+ +D LT +AP I R++D+ + L GQV + N +A+A+ + Sbjct: 146 AGKTIGVTRGSTEDLALTAVAPASATIKRYEDNNATAQSYLIGQVQLVTLGNIVANAVNE 205 Query: 202 QNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWITANLKNGKLPAIYQQWVGSPMP 260 + + L+ KF ++D P +G+ KGEPAL + +N IT +G+L + Q+W+ P+P Sbjct: 206 RTRLRQLDVKFPVEDTPCYVGVAKGEPALLEKVNAAITKLKSDGRLNDLSQRWIKMPLP 264