BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3780.p (244 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl381 [E] COG1126 ABC-type polar amino acid transport system, A... 315 6e-86 AGc2580 [E] COG1126 ABC-type polar amino acid transport system, ... 301 9e-82 AGpA331 [E] COG1126 ABC-type polar amino acid transport system, ... 294 1e-79 SMa0508 [E] COG1126 ABC-type polar amino acid transport system, ... 288 6e-78 AF0680 [E] COG1126 ABC-type polar amino acid transport system, A... 276 2e-74 >AGl381 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 315 bits (807), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 152/240 (63%), Positives = 194/240 (80%), Gaps = 1/240 (0%) Query: 5 VKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIHVC 64 V ++++HKSFG+ +VL GVSL V +G++ A+IG+SGSGKSTLLRC+NGLEK+++G I + Sbjct: 4 VIVENVHKSFGALEVLKGVSLTVGRGEVFALIGRSGSGKSTLLRCMNGLEKINSGRIEIA 63 Query: 65 GHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAHKV 124 GH + D LR+LR VGIVFQSYNLFPHLTV NI LA +K ++ E K IA +V Sbjct: 64 GHALGG-DATALRKLRTDVGIVFQSYNLFPHLTVGENIMLAPRIVKDVAKSETKDIAREV 122 Query: 125 LQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVME 184 LQLVGL K ++YP+QLSGGQ QRVAIARSLAM P++MLFDEVTSALDPELT EVL VME Sbjct: 123 LQLVGLSEKFDSYPDQLSGGQQQRVAIARSLAMRPKVMLFDEVTSALDPELTEEVLTVME 182 Query: 185 DLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVASDL 244 +LA+GGMTM+LVTHEMAFAR++A +FMH+G++WE G ELF+NP+T EL++FV +D+ Sbjct: 183 NLAKGGMTMILVTHEMAFARRVATETIFMHKGKIWEQGRSAELFANPQTPELRQFVKADV 242 >AGc2580 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 301 bits (771), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 148/240 (61%), Positives = 185/240 (77%), Gaps = 1/240 (0%) Query: 3 AIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIH 62 ++V I +HK +G+ +VL GVSL V+ GQ+VAIIG+SGSGKST+LRC+NGLE+ +G+I Sbjct: 2 SVVTIDQVHKRYGALEVLKGVSLNVEAGQVVAIIGRSGSGKSTMLRCINGLEEFQSGNIT 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAH 122 GH + D+ LR+LRK VGIVFQSYNLFPHLTV NI L+ + ++ +A +A Sbjct: 62 AAGHRVEQ-DQTKLRQLRKDVGIVFQSYNLFPHLTVGENIMLSPKITQDVARADADVLAR 120 Query: 123 KVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKV 182 KVL VGL K +AYP+ LSGGQ QRVAIARSLAM P++MLFDEVTSALDPELT EVL V Sbjct: 121 KVLAQVGLAEKFDAYPDMLSGGQQQRVAIARSLAMRPKVMLFDEVTSALDPELTGEVLLV 180 Query: 183 MEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVAS 242 ME LAR GMTM+LVTHEM+FAR +A V VFMHQG++WEMG +LF P+T ELQ F+++ Sbjct: 181 MEQLAREGMTMLLVTHEMSFARSVAHVTVFMHQGKIWEMGASKQLFEKPQTPELQAFLSN 240 >AGpA331 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 294 bits (753), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 141/239 (58%), Positives = 190/239 (79%), Gaps = 1/239 (0%) Query: 3 AIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIH 62 A+V+IK++ K++G +VL GVSL+V++G++V IIG+SGSGKSTLLRC+N LE +++G+I Sbjct: 2 ALVEIKNVRKNYGPLEVLKGVSLDVEKGEIVTIIGRSGSGKSTLLRCINALETINSGEIL 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAH 122 + G + + LR++R++VGIVFQ++NLFPH+T+E+N+TLA + A+++A Sbjct: 62 LEGQPVS-ANMDGLRQMRQKVGIVFQAFNLFPHMTIEKNVTLAPVLTGRTDKRGARELAL 120 Query: 123 KVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKV 182 VL+ VGL +K +AYPEQLSGGQ QRVAIAR LAM+P LMLFDEVTSALDPEL EVLKV Sbjct: 121 SVLERVGLADKLKAYPEQLSGGQQQRVAIARCLAMSPHLMLFDEVTSALDPELVGEVLKV 180 Query: 183 MEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVA 241 ME++A GMTMVLVTHEM+FAR +A LVFMHQG+VWE G P LF++P+T EL+ F+ Sbjct: 181 MEEMAAQGMTMVLVTHEMSFARNVATKLVFMHQGRVWEQGDPKRLFADPQTPELKSFIG 239 >SMa0508 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Sme Sinorhizobium meliloti Length = 243 Score = 288 bits (738), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 143/242 (59%), Positives = 180/242 (74%), Gaps = 1/242 (0%) Query: 3 AIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIH 62 ++V K++ KSFG +VL GVSL V+ G++VA+IG SGSGKST LRCLNGLE VD+G+I Sbjct: 2 SVVVAKNIRKSFGGLQVLKGVSLTVEGGEVVALIGGSGSGKSTFLRCLNGLESVDSGEIE 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAH 122 V GH + LR LR+ VGIVFQSYNLFPHLT NI LA +K + D A+ A Sbjct: 62 VAGHRMSR-KPAELRRLRRDVGIVFQSYNLFPHLTAGENIMLAPVQVKGIGKDAARSEAK 120 Query: 123 KVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKV 182 + L LVGL ++ EAYP+ LSGGQ QRVAIARSLAM P+++LFDEVTSALDPELT EVL V Sbjct: 121 RCLSLVGLGDRFEAYPDMLSGGQQQRVAIARSLAMQPKVLLFDEVTSALDPELTGEVLAV 180 Query: 183 MEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVAS 242 +E LAR GMTM+LVTHEM FAR++A+ +FM G + E GP E FS+P+T EL+ F+ + Sbjct: 181 IEKLARDGMTMILVTHEMGFARRVANRTIFMRDGIIHEEGPSAEFFSSPKTPELRAFLHA 240 Query: 243 DL 244 ++ Sbjct: 241 EV 242 >AF0680 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Afu Archaeoglobus fulgidus Length = 242 Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 136/239 (56%), Positives = 186/239 (77%), Gaps = 1/239 (0%) Query: 3 AIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIH 62 A ++I DLHK FG +VL GV+++V++G++V IIG SGSGKSTLLRC+N LE+ +G I Sbjct: 2 AQLEIIDLHKRFGELEVLKGVTMKVEKGEVVVIIGPSGSGKSTLLRCINRLEEPTSGKIL 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAH 122 + G DI + K+++ ++R+++GIVFQ +NLFPHLT +N+TLA IKKMS EA+++ Sbjct: 62 LDGVDITN-SKIDINKVRQRIGIVFQQFNLFPHLTALQNVTLAPIKIKKMSKREAEELGM 120 Query: 123 KVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKV 182 ++L+ VGLE+K + YP QLSGGQ QRVAIAR+LAM PE+MLFDEVTSALDPEL EVL V Sbjct: 121 RLLEKVGLEDKADYYPAQLSGGQQQRVAIARALAMNPEVMLFDEVTSALDPELVKEVLDV 180 Query: 183 MEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVA 241 M+ LAR GMTMV+VTHEM FAR++ D ++FM G + E G P+++FSNP+ +KF++ Sbjct: 181 MKQLARDGMTMVVVTHEMGFAREVGDRVIFMDGGVIVEEGKPEQIFSNPKHERTRKFLS 239