BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3773.p         (173 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PM0690 Non COG                                                         33   0.28 
ybjY [M] COG0845 Membrane-fusion protein Eco Escherichia coli K12      31   1.3  
Z1115 [M] COG0845 Membrane-fusion protein EcZ Escherichia coli O...    31   1.3  
ECs0964 [M] COG0845 Membrane-fusion protein Ecs Escherichia coli...    31   1.3  
SP1627 [R] COG2910 Putative NADH-flavin reductase Spn Streptococ...    31   1.5  

>PM0690 Non COG
          Length = 257

 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 14/143 (9%)

Query: 22  DQEAEWWSYQTQRNNHAYAVKLDMALRRTFPLAGFPYVVVTRVAYTPDTPEGLPPLPEQD 81
           D+   W +Y++  N+      +++ +   FP +   +++  +  Y       LP   +  
Sbjct: 2   DKGQSWQNYRSVLNDKLAIFSVNLEVLHQFPSSKSHHIIQFKFPYAMLDENALP---DPS 58

Query: 82  RLEALSEQVA---AAIGKKTRSLFVGTAFSLGQQQSWFYVTDPNGLEPVVADIHARFCQA 138
             + L  Q+      +     +L+ G   S G  Q +FY    +  EP +  +     Q 
Sbjct: 59  FYQTLMRQIVKLWTQLSALPDTLYAGHVLSAGHAQLYFYC---DNTEPFLEVLK----QF 111

Query: 139 CKTSTVTLS-DPTWALYRDQLLP 160
            + S + +  DP W +Y D LLP
Sbjct: 112 EEISAIEIQYDPHWDIYFDFLLP 134


>ybjY [M] COG0845 Membrane-fusion protein Eco Escherichia coli K12
          Length = 380

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 116 FYVTDPNGLE--PVVADIHARFCQACKTSTVTLS---DPTW-ALYRDQLLPDGETRQR 167
           F V +PNGL    + A +H +        T+ LS   DP     Y+ +LL +GETR+R
Sbjct: 288 FEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETRER 345


>Z1115 [M] COG0845 Membrane-fusion protein EcZ Escherichia coli O157:H7
           EDL933
          Length = 380

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 116 FYVTDPNGLE--PVVADIHARFCQACKTSTVTLS---DPTW-ALYRDQLLPDGETRQR 167
           F V +PNGL    + A +H +        T+ LS   DP     Y+ +LL +GETR+R
Sbjct: 288 FEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETRER 345


>ECs0964 [M] COG0845 Membrane-fusion protein Ecs Escherichia coli O157:H7
          Length = 380

 Score = 31.2 bits (69), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 116 FYVTDPNGLE--PVVADIHARFCQACKTSTVTLS---DPTW-ALYRDQLLPDGETRQR 167
           F V +PNGL    + A +H +        T+ LS   DP     Y+ +LL +GETR+R
Sbjct: 288 FEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETRER 345


>SP1627 [R] COG2910 Putative NADH-flavin reductase Spn Streptococcus
           pneumoniae TIGR4
          Length = 209

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 16  QEASAQDQEAEWWSYQTQRNNHAYAVKLDMALRRTFPLAGFPYVVVTRVAYTPDTPEGLP 75
           +EA  +  E         ++     +K D+       L GF  V+    AYTPDT     
Sbjct: 18  EEAVKRGHEVTAIVRSENKSQAESIIKKDLFELTKDDLTGFDAVISAFGAYTPDT----- 72

Query: 76  PLPEQDRLEALSEQVAAAIGKKTRSLFVGTAFSL 109
            LP   +   L  Q+ A  G +TR L VG A SL
Sbjct: 73  -LPLHSKSIELFNQLLA--GTQTRFLVVGGAGSL 103