BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3769.p (275 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00558 [K] COG2207 AraC-type DNA-binding domain-containing pro... 152 5e-37 AGc1998 [K] COG2207 AraC-type DNA-binding domain-containing prot... 129 7e-30 BS_ybfI [K] COG2207 AraC-type DNA-binding domain-containing prot... 127 3e-29 VCA1001 [K] COG2207 AraC-type DNA-binding domain-containing prot... 112 1e-24 PA2917 [K] COG2207 AraC-type DNA-binding domain-containing prote... 102 1e-21 >SMc00558 [K] COG2207 AraC-type DNA-binding domain-containing proteins Sme Sinorhizobium meliloti Length = 285 Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 95/269 (35%), Positives = 141/269 (52%), Gaps = 9/269 (3%) Query: 7 FWRDPELPFLEGRRATGSLSCYAPHTHDSFSIGIVDGGHSIFALGEQRQAIVPGDVVLVR 66 FWRDP +E AT +APH HD+FSIG ++ G I + +R PGD+ L+ Sbjct: 23 FWRDPRFKGMECLSATFITHEFAPHAHDTFSIGAIEAGSQISTIKGERSQTGPGDLYLIN 82 Query: 67 AGDVHCCNPTELASWSYRMFHLDTGWLARLLDETPATRGLLASLQSQVLRAPQAVHL-LD 125 ++H +P + YRM + T L +L++ S++L + + L Sbjct: 83 PDEIHDGHPGH-EGYRYRMVYPPTDLLVEILEDVTGRSFKGTPSFSRLLLTDRELALGFH 141 Query: 126 RMTQALEARNADLQAEVITCLHELMLLCAQACVRE-SALTSPL-AEDGDGLQRAHDFLLA 183 R +ALE + L+A+ + A+ R +A+ PL + + RA D+L+ Sbjct: 142 RAHRALEGKVGTLEAD-----ESMFGFLARLFERHGNAIIVPLQTRESSAVHRARDYLVE 196 Query: 184 HCRERIALDTLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGVSAVAAA 243 + I L+ LA+LAG SR LIR FR+ F +TPHA D ++R+A+ LL++G SA A Sbjct: 197 NYTHDIGLEELAKLAGLSRAHLIRAFRKEFHITPHAFLTDKRVREAKALLRRGWSAADTA 256 Query: 244 YDTGFADQSHFHRAFKSRVAVTPLQYTQA 272 Y GFADQ+HF R FK+R VTP Y A Sbjct: 257 YHCGFADQAHFSRHFKARTGVTPGAYRSA 285 >AGc1998 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 285 Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 126/266 (47%), Gaps = 9/266 (3%) Query: 7 FWRDPELPFLEGRRATGSLSCYAPHTHDSFSIGIVDGGHSIFALGEQRQAIVPGDVVLVR 66 FWRD +E AT Y+PH HD+FSIG ++ G I + + PG + L+ Sbjct: 23 FWRDRRFGGMECLSATFLTHEYSPHAHDTFSIGAIESGSQISTIQGTTEQTGPGHLYLIN 82 Query: 67 AGDVHCCNPTELASWSYRMFHLDTGWLARLL-DETPATRGLLASLQSQVLRAPQAVHLLD 125 +VH P + YRM + D L ++ D T + S + R PQ Sbjct: 83 PDEVHDGAPGG-GGYRYRMIYPDAELLRDIIEDVTGRVFHGMPSFPKFLPRDPQMAASFQ 141 Query: 126 RMTQALEARNADLQAE--VITCLHELMLLCAQACVRESALTSPLAEDGDGLQRAHDFLLA 183 + LEA+ L+A+ + + L L A + A + A D+L Sbjct: 142 MAHRRLEAKTGALEADEGMFSVLAALFGRHGSAIILAVETREKTA-----VYNARDYLTD 196 Query: 184 HCRERIALDTLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGVSAVAAA 243 + I L+ LA +AG SR LIR FR+ F +TPHA D++IRQAR LL+ G A Sbjct: 197 NYETDIGLEELASIAGLSRAHLIRAFRKEFHITPHAYLTDVRIRQARRLLRAGEMPAEVA 256 Query: 244 YDTGFADQSHFHRAFKSRVAVTPLQY 269 GFADQ+HF R FK+R VTP Q+ Sbjct: 257 ALCGFADQAHFTRHFKARTGVTPGQF 282 >BS_ybfI [K] COG2207 AraC-type DNA-binding domain-containing proteins Bsu Bacillus subtilis Length = 275 Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/268 (29%), Positives = 127/268 (47%), Gaps = 17/268 (6%) Query: 10 DPELPFLEGRRATGSLSCYAPHTHDSFSIGIVDGGHSIFALGEQRQAIVPGDVVLVRAGD 69 DP L +E R G + + H HD + IG ++ G A +Q I PGD++L D Sbjct: 11 DPHL-HIEAYRFKGIMQKFPNHFHDYYVIGFIEKGQRYLACQDQEYIINPGDLLLFNPRD 69 Query: 70 VHCCNPTELASWSYRMFHLDTGWLARLLDETPATRGLLASLQSQVLR-----APQAVHLL 124 H C + + YR ++ + + + E + L Q + R + Q +H+L Sbjct: 70 THSCEQIDGRTLDYRCINVMPDIMEKAVKEITGSGHLPYFSQHVLFRHELTASLQELHIL 129 Query: 125 -DRMTQALEARNADLQAEVITCLHELMLLCAQACVRESALTSPLAEDGDGLQRAHDFLLA 183 QAL L H + S + E D ++ +FL Sbjct: 130 ISEEKQALRKEELFLHLLEELIRH----------YSDVTFLSSVPEPSDEVKMVCEFLEE 179 Query: 184 HCRERIALDTLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGVSAVAAA 243 H E + L+ L+EL G S+Y L+R F ++ G+TP++ ++I QA+ LL+QGV + AA Sbjct: 180 HYAENVTLNDLSELTGWSKYHLLRSFTKQKGITPNSYMETIRINQAKKLLEQGVRPIDAA 239 Query: 244 YDTGFADQSHFHRAFKSRVAVTPLQYTQ 271 + TGF+DQSH + FK +V +TP QY + Sbjct: 240 FQTGFSDQSHMTKFFKRQVGLTPKQYMK 267 >VCA1001 [K] COG2207 AraC-type DNA-binding domain-containing proteins Vch Vibrio cholerae Length = 277 Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/248 (30%), Positives = 124/248 (50%), Gaps = 15/248 (6%) Query: 28 YAPHTHDSFSIGIVD-GGHSIFALGEQRQAIVPGD-VVLVRAGDVHCCNPTELASWSYRM 85 ++ H+H+ +++G+++ G S + G I P D ++LV A +VH + W+Y+ Sbjct: 36 FSRHSHEGYTVGVIERGAQSFYRTGGNH--IAPQDSIILVNADEVHTGHSAVEGGWAYKA 93 Query: 86 FHLDTGWLARLLDETPATRGLLASLQSQVLRAPQAVHLLDRMTQALEARNADLQAEVITC 145 + A + E A G Q+ V+ P+ L + + LE L E + Sbjct: 94 MYPLPEQFATVAKEIGANTGAPYFPQA-VVYDPELASQLRLVFETLEKSTNRLLRETLIY 152 Query: 146 LHELMLLCAQACVRESALTSPLAEDGDGLQR----AHDFLLAHCRERIALDTLAELAGTS 201 + L+ T+P A+ R +FL + ++L+ LA+LAG S Sbjct: 153 ASLVKLMT------RHGRTAPQADQPLSALRPLLLVKEFLDDFPQADVSLEELAQLAGLS 206 Query: 202 RYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGVSAVAAAYDTGFADQSHFHRAFKSR 261 + L+R F+++FGL PHA Q+ ++R A+TLL+QGVS A + GF DQSH HR FK Sbjct: 207 PFHLVRTFQKQFGLPPHAYQIQARLRLAKTLLKQGVSISETAQECGFHDQSHLHRHFKKA 266 Query: 262 VAVTPLQY 269 + +TP QY Sbjct: 267 LGITPKQY 274 >PA2917 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 278 Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 113/260 (43%), Gaps = 13/260 (5%) Query: 16 LEGRRATGSLSCYAPHTHDSFSIGIVDGGHSIFALGEQRQAIVPGDVVLVRAGDVHCCNP 75 +E RA Y PH HDS+ IG + G F +R G V LV G++H Sbjct: 17 IETLRAHFEGHAYDPHWHDSYLIGYTEIGVQQFNCRRRRHDSTAGQVFLVEPGEIHDGRA 76 Query: 76 TELASWSYRMFHLDTGWLARLL----DETPATRGLLASLQSQVLRAPQAVHLLDRMTQAL 131 ++Y M +L WL R L D+ P+ R + + P+ + + + L Sbjct: 77 PIAGGFTYSMLYLQPDWLRRELRATFDDAPSDRD--PGFHANLTEDPRLTLAIAQAFRVL 134 Query: 132 EARNADL--QAEVITCLHELMLLCAQACVRESALTSPLAEDGDGLQRAHDFLLAHCRERI 189 R L Q + L L + + PL Q+A D+L AH + I Sbjct: 135 HGRELRLLRQTALELVLERLRVHLGWREAKPFDPRLPLVA-----QKARDYLHAHFYQDI 189 Query: 190 ALDTLAELAGTSRYQLIRQFRRRFGLTPHALQLDMKIRQARTLLQQGVSAVAAAYDTGFA 249 LD LA GT R++L R F+ +GL P+A + +++ +AR +L G A GFA Sbjct: 190 GLDELASACGTDRFRLNRAFKAAYGLPPYAYLVQLRLAKARQMLAVGGQPADLASALGFA 249 Query: 250 DQSHFHRAFKSRVAVTPLQY 269 DQSH R F+ +TP Y Sbjct: 250 DQSHLGRWFRRAYGMTPAAY 269