BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3743.p         (194 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0670 [NT] COG0835 Chemotaxis signal transduction protein Rso ...    92   7e-19
PA0410 [NT] COG0835 Chemotaxis signal transduction protein Pae P...    44   2e-04
CAC1233_1 [NT] COG0835 Chemotaxis signal transduction protein Ca...    43   3e-04
TM0701 [NT] COG0835 Chemotaxis signal transduction protein Tma T...    43   5e-04
XF1954 [NT] COG0835 Chemotaxis signal transduction protein Xfa X...    40   0.004

>RSc0670 [NT] COG0835 Chemotaxis signal transduction protein Rso Ralstonia
           solanacearum
          Length = 181

 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 4/172 (2%)

Query: 23  REGLEQFQASLLARMAACDNESTRSRRLAVLIGNRHCLIPLTQASEILPLDGLTLTPVPA 82
           R+ L ++QA L  R+     +++    L V IG+RH L+ L    E+L  D      VP 
Sbjct: 11  RQRLHEYQAMLARRLQEARAKASMDSFLGVQIGDRHWLLSLGDTGEVL--DYQPPARVPL 68

Query: 83  THAWFRGLLNIRGNLVGLADLSGLAGAPLQPCGAGSHALLLAPSLAPQCGLLVAGVLGLR 142
           T  W+ GL+N RG L+G+ D +  +G      G G+  ++L+      C +LV  V GLR
Sbjct: 69  TQPWYLGLVNARGTLLGVIDFALFSGEAPTVGGVGAKMVVLSKDPQRACAILVPRVAGLR 128

Query: 143 DIEEMTRISKKYEEGIHLPGVNGRYKDGSGQQWDELDLSALSRDSNFLQIGR 194
            + ++  +    E+G  LP  N  ++D  G  W EL +  L  D  FLQ+GR
Sbjct: 129 SLSDLQAVEAGQEDG--LPWQNRAWRDAQGTLWRELSVRQLLADPAFLQVGR 178


>PA0410 [NT] COG0835 Chemotaxis signal transduction protein Pae Pseudomonas
           aeruginosa
          Length = 178

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 16/145 (11%)

Query: 54  IGNRHCLIPLTQASEILPLDGLTLTPVPATHAWFRGLLNIRGNLVGLADLSGLAGAPLQP 113
           +G R  + P+ +  E+L       T +P    W +G+ N+RG L+ + DL G  G  L P
Sbjct: 42  MGGRFFVAPMGEVGEVL--HEPRYTQLPGVKTWVKGVANVRGRLLPIMDLCGFLGTELSP 99

Query: 114 CGAGSHALLLAPSLAPQCGLLVAGVLGLRDI------EEMTRISKKYEEGIHLPGVNGRY 167
                  +L+   L    GL+V  V G++        E++  +    +  IH  GV  R 
Sbjct: 100 L-RKQRRVLVVEHLDVFAGLIVDEVFGMQHFPVDTFSEQLPPLEAALQPFIH--GVFHRE 156

Query: 168 KDGSGQQWDELDLSALSRDSNFLQI 192
                Q W      AL++   FL +
Sbjct: 157 -----QPWLVFSPHALAQHQGFLDV 176


>CAC1233_1 [NT] COG0835 Chemotaxis signal transduction protein Cac Clostridium
           acetobutylicum
          Length = 157

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 50  LAVLIGNRHCLIPLTQASEILPLDGLTLTPVPATHAWFRGLLNIRGNLVGLADLSGLA-- 107
           L  +IG+RH  I + +  E++ +DG  +T +P T+    GL+  R  ++ L DL  +   
Sbjct: 17  LEFVIGDRHFAINIIKVKEVVEVDGGKITKLPETNPAIAGLILCRNEIITLVDLKYVVNK 76

Query: 108 GAPLQPC 114
           GA ++ C
Sbjct: 77  GAKVESC 83


>TM0701 [NT] COG0835 Chemotaxis signal transduction protein Tma Thermotoga
           maritima
          Length = 151

 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 77  LTPVPATHAWFRGLLNIRGNLVGLADLSGLAGAPLQPCGAGSHALLLAPSLAPQCGLLVA 136
           +TPVP +  +  G++N+RG ++ + +L+ + G         S  +++A +   + G LV 
Sbjct: 39  ITPVPKSRHFVEGVINLRGRIIPVVNLAKILGISFDEQKMKS--IIVARTKDVEVGFLVD 96

Query: 137 GVLGLRDIEE----MTRISKKY 154
            VLG+  I E    +T +S K+
Sbjct: 97  RVLGVLRITENQLDLTNVSDKF 118


>XF1954 [NT] COG0835 Chemotaxis signal transduction protein Xfa Xylella
           fastidiosa 9a5c
          Length = 176

 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 54  IGNRHCLIPLTQASEILPLDGLTLTPVPATHAWFRGLLNIRGNLVGLADLSGLAGAPLQP 113
           IG+R+ +   ++  +I+P+   T+T VP    W  G+ N+RG+L+ + DL          
Sbjct: 39  IGSRNLVSDFSEVVQIVPMP--TVTLVPGAQPWLLGVGNLRGSLLPVIDLKQFLEGQRTV 96

Query: 114 CGAGSHALLLAPSLAPQCGLLVAGVLGLRDIEEMTRISKKYEEGIHLPGVNGRYKDG--- 170
              G   L++   +     L++  + G R       +S   E G    G    + +    
Sbjct: 97  LREGQRVLIMRLGI-DNAALVIDDLYGQRSFS----LSNAIEIGDLAQGRYAHFIERVFL 151

Query: 171 -SGQQWDELDLSALSRDSNFLQ 191
             GQ W    LS LSR   F Q
Sbjct: 152 VDGQSWCVFSLSLLSRTPEFRQ 173