BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3733.p (471 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2664 [C] COG0277 FAD/FMN-containing dehydrogenases Rso Ralsto... 679 0.0 mll1488 [C] COG0277 FAD/FMN-containing dehydrogenases Mlo Mesorh... 524 e-148 SMc01455 [C] COG0277 FAD/FMN-containing dehydrogenases Sme Sinor... 509 e-144 BMEI0599 [C] COG0277 FAD/FMN-containing dehydrogenases Bme Bruce... 501 e-141 AGc3718 [C] COG0277 FAD/FMN-containing dehydrogenases Atu Agroba... 496 e-140 >RSc2664 [C] COG0277 FAD/FMN-containing dehydrogenases Rso Ralstonia solanacearum Length = 472 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/471 (68%), Positives = 389/471 (82%), Gaps = 3/471 (0%) Query: 1 MNHLVDARKLKR-PVPQALLDELKAVFGERCSTTLAMREHHGRDESSYDPMLPDAVVFAH 59 MNH + L R P+P A+LD L+A FG+R ST+ A+R HHGRDES+YDPMLPDAVVFA Sbjct: 1 MNHPLPHPGLARKPIPPAMLDALRARFGDRVSTSDAVRAHHGRDESAYDPMLPDAVVFAQ 60 Query: 60 STEEVATFVKLCSQYDTPIIPYGAGTSLEGHVLALQGGVTVDLSQMNQVLAVNAEDLTAT 119 +TE+V +LC ++ P+IP+GAG+SLEGH+LA+ GGVT+DLSQMN+VL+V+ EDLT T Sbjct: 61 TTEDVVAVARLCHEHAIPLIPFGAGSSLEGHLLAVAGGVTLDLSQMNRVLSVHPEDLTVT 120 Query: 120 VQAGVTRKQLNQEIKDTGLFFPIDPGADASLGGMASTRASGTNAVRYGTMKENTLTLTVV 179 V+ GVTRKQLN +I+DTGLFFPIDPGADAS+GGM +TRASGTNAVRYGTM+EN L LTVV Sbjct: 121 VEPGVTRKQLNADIRDTGLFFPIDPGADASIGGMCATRASGTNAVRYGTMRENVLNLTVV 180 Query: 180 TAQGEIIKTGTRAKKSSAGYDLTRVYVGSEGTLGIITEVTVRLYPQPEAISAAICSFPSV 239 TA G +IKT RA+KSSAGYDLTR+++GSEGTLGIITE+T+RLYPQPEA+SAA+C+FP + Sbjct: 181 TADGRVIKTANRARKSSAGYDLTRLFIGSEGTLGIITEITLRLYPQPEAVSAAVCAFPGM 240 Query: 240 ADAVNTVIQTIQMGVPLARVELLDENGVRAINAHDKLSLPVNPLLLFEFHGSDNGVKEQA 299 DAV VI TIQMGVP+ARVE +D +RAIN +DKLSLP P L FEFHGS +GV+EQA Sbjct: 241 GDAVCAVIDTIQMGVPVARVEFVDALAIRAINRYDKLSLPELPTLFFEFHGSAHGVQEQA 300 Query: 300 ELVQDIAHENHARGFEWATRPEDRSRLWTARHNAYFALLQLRPGARAISTDCCVPISRLA 359 E VQ IA E+ +GFEWATRPEDRSRLW ARHNAYFA LQL+PG RA++TD CVPISRLA Sbjct: 301 ETVQAIAAEHRGQGFEWATRPEDRSRLWNARHNAYFAFLQLKPGCRAVTTDVCVPISRLA 360 Query: 360 ECVLATKAD--CEEQGLTHAIIGHVGDGNFHVQMMVDPNDPADIARAEGVNARMVARAIG 417 +CV+ T+ D L I+GHVGDGNFHV ++VDP+ P ++ AE +N R+VARAI Sbjct: 361 DCVVETEQDLLASPLKLPAPIVGHVGDGNFHVALLVDPDKPEELEEAERINRRIVARAIA 420 Query: 418 MDGTCTGEHGVGLHKMDFLVQEHGEGAIAVMRAIKHALDPKNIMNPGKILR 468 MDGTCTGEHGVGLHKMDFLV EHG+ AI +MR++K ALDPK+I+NPGKI R Sbjct: 421 MDGTCTGEHGVGLHKMDFLVAEHGDDAIDLMRSVKQALDPKHILNPGKIFR 471 >mll1488 [C] COG0277 FAD/FMN-containing dehydrogenases Mlo Mesorhizobium loti Length = 575 Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust. Identities = 260/451 (57%), Positives = 323/451 (71%), Gaps = 1/451 (0%) Query: 17 ALLDELKAVFGERCSTTLAMREHHGRDESSYDPMLPDAVVFAHSTEEVATFVKLCSQYDT 76 A+L LK GER T A+R H + PD V F +T EV V+ C+ + Sbjct: 117 AVLGILKQQLGERFQTGQAIRAQHAHTTTYIPTQAPDGVAFPETTAEVQEIVRACAAHRV 176 Query: 77 PIIPYGAGTSLEGHVLALQGGVTVDLSQMNQVLAVNAEDLTATVQAGVTRKQLNQEIKDT 136 P+I +G G+SLEGH A GG++VD S+MN++LAVN +DL TV+ GVTR+ LN+ ++DT Sbjct: 177 PVIAFGVGSSLEGHTNAPGGGISVDTSRMNRILAVNPQDLDCTVEPGVTREDLNRHLRDT 236 Query: 137 GLFFPIDPGADASLGGMASTRASGTNAVRYGTMKENTLTLTVVTAQGEIIKTGTRAKKSS 196 GLFFPIDPGA+ASLGGMA+TRASGTNAVRYGTM+EN L+LT V A GE + TG RAKKSS Sbjct: 237 GLFFPIDPGANASLGGMAATRASGTNAVRYGTMRENVLSLTAVMADGETVTTGKRAKKSS 296 Query: 197 AGYDLTRVYVGSEGTLGIITEVTVRLYPQPEAISAAICSFPSVADAVNTVIQTIQMGVPL 256 AGYDLTR+ VGSEGTLGIIT +T++L P+AIS +C FPSV A N VI TIQMG+P+ Sbjct: 297 AGYDLTRLLVGSEGTLGIITSLTLKLQGIPQAISGGVCPFPSVEAACNAVIATIQMGIPV 356 Query: 257 ARVELLDENGVRAINAHDKLSLPVNPLLLFEFHGSDNGVKEQAELVQDIAHENHARGFEW 316 AR+EL++ +RA+ + KL P +P L EFHGSD GV EQAE IA EN F W Sbjct: 357 ARIELVNALQMRAMKNYSKLDYPESPCLFVEFHGSDAGVAEQAETFGMIAEENGGGPFLW 416 Query: 317 ATRPEDRSRLWTARHNAYFALLQLRPGARAISTDCCVPISRLAECVLATKADCEEQGLTH 376 + E+R++LW ARH+AY+A L LRPGA+ +STD CVPISR AECV T+AD E GL Sbjct: 417 TSVAEERTKLWKARHDAYWASLTLRPGAKGLSTDVCVPISRFAECVTETEADIAEMGLIA 476 Query: 377 AIIGHVGDGNFHVQMMVDPNDPADIARAEGVNARMVARAIGMDGTCTGEHGVGLHKMDFL 436 I+GH GDGNFHV +++D NDP +IA +E AR+ RAI MDGTCTGEHG+G K+ FL Sbjct: 477 PIVGHAGDGNFHVLVLMDVNDPKEIALSEKFVARLNLRAIAMDGTCTGEHGIGQGKIGFL 536 Query: 437 VQEHGEGAIAVMRAIKHALDPKNIMNPGKIL 467 E G G + +MR+IK ALDP+NIMNPGKIL Sbjct: 537 RPELGHG-VDIMRSIKQALDPQNIMNPGKIL 566 >SMc01455 [C] COG0277 FAD/FMN-containing dehydrogenases Sme Sinorhizobium meliloti Length = 468 Score = 509 bits (1311), Expect = e-144, Method: Compositional matrix adjust. Identities = 251/446 (56%), Positives = 314/446 (70%), Gaps = 1/446 (0%) Query: 22 LKAVFGERCSTTLAMREHHGRDESSYDPMLPDAVVFAHSTEEVATFVKLCSQYDTPIIPY 81 L FG+R T A+R H + LPDAVVF S EV V++ ++ P+IP+ Sbjct: 23 LATRFGDRFQTGEAIRAQHANTTTYIPAQLPDAVVFPESAAEVREIVEIACEHRVPLIPF 82 Query: 82 GAGTSLEGHVLALQGGVTVDLSQMNQVLAVNAEDLTATVQAGVTRKQLNQEIKDTGLFFP 141 G G+SLEGHV A GG++VD+ +MN+VLAVNAEDL TV+ GVTR++LN ++DTGLFFP Sbjct: 83 GTGSSLEGHVNAPHGGISVDMMRMNRVLAVNAEDLDCTVEPGVTREELNSYLRDTGLFFP 142 Query: 142 IDPGADASLGGMASTRASGTNAVRYGTMKENTLTLTVVTAQGEIIKTGTRAKKSSAGYDL 201 IDPGA+AS+GGMASTRASGTNAVRYGTMKEN L +T V A G I+T RA+KSSAGYDL Sbjct: 143 IDPGANASIGGMASTRASGTNAVRYGTMKENVLAVTAVVAGGREIRTAHRARKSSAGYDL 202 Query: 202 TRVYVGSEGTLGIITEVTVRLYPQPEAISAAICSFPSVADAVNTVIQTIQMGVPLARVEL 261 TR++VG+EGTLGI+T +T+RL PE IS +C FP++ADA N VI TIQ G+P+AR+EL Sbjct: 203 TRLFVGAEGTLGIVTSITLRLQGIPEVISGGVCPFPTIADACNAVILTIQSGIPVARIEL 262 Query: 262 LDENGVRAINAHDKLSLPVNPLLLFEFHGSDNGVKEQAELVQDIAHENHARGFEWATRPE 321 LD ++A NA+ L+ P L EFHG+ V+ Q+ +IA E + GF W T PE Sbjct: 263 LDALQMKACNAYSGLTYQETPTLFVEFHGNGESVELQSRQFAEIASEFGSTGFIWTTNPE 322 Query: 322 DRSRLWTARHNAYFALLQLRPGARAISTDCCVPISRLAECVLATKADCEEQGLTHAIIGH 381 +R+RLW ARHNAY+A L PG +STD CVPISRLA+CV AT D GL I+GH Sbjct: 323 ERARLWKARHNAYWAQKSLMPGRAILSTDVCVPISRLADCVAATHEDIAAHGLVAPIVGH 382 Query: 382 VGDGNFHVQMMVDPNDPADIARAEGVNARMVARAIGMDGTCTGEHGVGLHKMDFLVQEHG 441 GDGNFHV ++ D D AD+A+AE R+ ARA+ MDGTCTGEHG+G KM FL E G Sbjct: 383 AGDGNFHVGLLFDDKDAADVAQAEAFVERLNARALSMDGTCTGEHGIGQGKMPFLAAELG 442 Query: 442 EGAIAVMRAIKHALDPKNIMNPGKIL 467 + A+ +MR IK +LDP NI NPGKI Sbjct: 443 D-ALDLMRQIKRSLDPDNIFNPGKIF 467 >BMEI0599 [C] COG0277 FAD/FMN-containing dehydrogenases Bme Brucella melitensis Length = 468 Score = 501 bits (1290), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/446 (54%), Positives = 318/446 (71%), Gaps = 1/446 (0%) Query: 22 LKAVFGERCSTTLAMREHHGRDESSYDPMLPDAVVFAHSTEEVATFVKLCSQYDTPIIPY 81 LK FGER T A+RE HG + PD VVFA +T++V V++C+++ P++ + Sbjct: 23 LKQRFGERAQTGQAIREQHGHTTTYVPTQAPDIVVFAENTQDVQDVVRICAEHRVPVVAF 82 Query: 82 GAGTSLEGHVLALQGGVTVDLSQMNQVLAVNAEDLTATVQAGVTRKQLNQEIKDTGLFFP 141 GAG+SLEG V A GGV++D++ MN+V+AV+AEDL V+ GVTR+ LN+ ++DTGLFFP Sbjct: 83 GAGSSLEGQVNAPAGGVSLDMTHMNRVIAVHAEDLDCVVEPGVTRRALNEYLRDTGLFFP 142 Query: 142 IDPGADASLGGMASTRASGTNAVRYGTMKENTLTLTVVTAQGEIIKTGTRAKKSSAGYDL 201 IDPGA+A+LGGMASTRASGTNAVRYGTM+EN L L V G +I+T R KK++AGYDL Sbjct: 143 IDPGANATLGGMASTRASGTNAVRYGTMRENVLALKAVMPDGRLIETSKRVKKTAAGYDL 202 Query: 202 TRVYVGSEGTLGIITEVTVRLYPQPEAISAAICSFPSVADAVNTVIQTIQMGVPLARVEL 261 TR+ +G+EGTLGIITE+T++L P+AIS IC FP V A TVI+TIQMG+P+AR+EL Sbjct: 203 TRLLIGAEGTLGIITELTLKLQGIPQAISGGICPFPDVDSACRTVIETIQMGIPVARIEL 262 Query: 262 LDENGVRAINAHDKLSLPVNPLLLFEFHGSDNGVKEQAELVQDIAHENHARGFEWATRPE 321 ++ ++A+ H KL P L EFHG+++GV EQAEL +IA + F+W E Sbjct: 263 VNTLQMQALIMHSKLPYEAQPYLFVEFHGTESGVGEQAELFGEIAAGHGGGAFQWTHDAE 322 Query: 322 DRSRLWTARHNAYFALLQLRPGARAISTDCCVPISRLAECVLATKADCEEQGLTHAIIGH 381 +R RLW ARH AY A LRPG + +STD CVPISRLA+C+ T+ D E GL I+GH Sbjct: 323 ERDRLWRARHEAYLASFLLRPGCKGVSTDVCVPISRLADCIGETEKDLAETGLIAPIVGH 382 Query: 382 VGDGNFHVQMMVDPNDPADIARAEGVNARMVARAIGMDGTCTGEHGVGLHKMDFLVQEHG 441 VGDGNFH+ +++D +D +++ RAE R+ RAI M+GTCTGEHG+G KM +L E G Sbjct: 383 VGDGNFHLLLLLDTDDASEMERAEAFMDRLAKRAIAMEGTCTGEHGIGQGKMKYLAMELG 442 Query: 442 EGAIAVMRAIKHALDPKNIMNPGKIL 467 A MRAIK ALDP NIMNPGKIL Sbjct: 443 -AATDYMRAIKKALDPDNIMNPGKIL 467 >AGc3718 [C] COG0277 FAD/FMN-containing dehydrogenases Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 477 Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/447 (54%), Positives = 308/447 (68%), Gaps = 1/447 (0%) Query: 22 LKAVFGERCSTTLAMREHHGRDESSYDPMLPDAVVFAHSTEEVATFVKLCSQYDTPIIPY 81 LK G++ T A RE HG + PD VVFA S ++V VK C+QY P+IP+ Sbjct: 30 LKQQLGDKLQTGQAFREQHGHTTTYLTLQAPDGVVFAESADDVKAVVKACAQYKVPVIPF 89 Query: 82 GAGTSLEGHVLALQGGVTVDLSQMNQVLAVNAEDLTATVQAGVTRKQLNQEIKDTGLFFP 141 G G+SLEG V A GG+ +D S+MN+++ VNAEDL TV+ GVTR+ LN ++DTGLFFP Sbjct: 90 GTGSSLEGQVNAPNGGICIDFSRMNRIIEVNAEDLDVTVEPGVTREDLNVYLRDTGLFFP 149 Query: 142 IDPGADASLGGMASTRASGTNAVRYGTMKENTLTLTVVTAQGEIIKTGTRAKKSSAGYDL 201 IDPGA+AS+GGMASTRASGTNAVRYGTMK+N L +T V A GE I+T RA+KSSAGYDL Sbjct: 150 IDPGANASIGGMASTRASGTNAVRYGTMKDNVLAVTAVVANGEEIRTARRARKSSAGYDL 209 Query: 202 TRVYVGSEGTLGIITEVTVRLYPQPEAISAAICSFPSVADAVNTVIQTIQMGVPLARVEL 261 TR++VG+EGTLG+IT VT+RL PE I+ +C+F S+ A + VI TIQMGVP+AR+EL Sbjct: 210 TRLFVGAEGTLGVITSVTLRLQGIPEKITGGVCTFDSIKAACDAVIMTIQMGVPVARIEL 269 Query: 262 LDENGVRAINAHDKLSLPVNPLLLFEFHGSDNGVKEQAELVQDIAHENHARGFEWATRPE 321 LDE VRA NA+ L+ P L EFHG++ Q++ +IA E + F W Sbjct: 270 LDEVQVRACNAYSGLNYAEKPTLFVEFHGTEETAALQSQQFAEIAAECGSVDFRWTGDAA 329 Query: 322 DRSRLWTARHNAYFALLQLRPGARAISTDCCVPISRLAECVLATKADCEEQGLTHAIIGH 381 +R++LW ARH+AY+A L P +STD CVPISRLA+CV+ T+ D E G I+GH Sbjct: 330 ERNKLWKARHDAYWASRALAPHLDGLSTDVCVPISRLADCVVETQRDIAENGFLAPIVGH 389 Query: 382 VGDGNFHVQMMVDPNDPADIARAEGVNARMVARAIGMDGTCTGEHGVGLHKMDFLVQEHG 441 GDGNFHV ++ D D +A+ E AR+ RAI MDGTCTGEHG+G KM FL +E G Sbjct: 390 AGDGNFHVLILFDGKDAESVAKTEAFVARLNRRAIAMDGTCTGEHGIGQGKMSFLAEEAG 449 Query: 442 EGAIAVMRAIKHALDPKNIMNPGKILR 468 A+ +MRAIK +LDP NI NPGK+ R Sbjct: 450 N-ALDLMRAIKTSLDPDNIFNPGKLFR 475