BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3719.p (411 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4147 [QK] COG3284 Transcriptional activator of acetoin/glycero... 286 9e-77 PA4021 [QK] COG3284 Transcriptional activator of acetoin/glycero... 263 7e-70 RSc3129 [QK] COG3284 Transcriptional activator of acetoin/glycer... 240 4e-63 SMb20102 [QK] COG3284 Transcriptional activator of acetoin/glyce... 239 1e-62 AGl278 [QK] COG3284 Transcriptional activator of acetoin/glycero... 231 2e-60 >PA4147 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Pae Pseudomonas aeruginosa Length = 625 Score = 286 bits (731), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 153/302 (50%), Positives = 200/302 (66%), Gaps = 17/302 (5%) Query: 90 RLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCASIPESLAESELFGYCKG 149 R+ +R +PVLI G+TG GKE +R LH SARR ++A+NCA+IPESL ESELFGY G Sbjct: 333 RVKDRNLPVLIQGETGAGKEVFARQLHQASARRDKPFVALNCAAIPESLIESELFGYVGG 392 Query: 150 AFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVTPLGALRPVPVDV 209 AF+GA GM+G +QQADGGTLFLDEIGDMPL LQTRLLRVL+E EV PLGA R VD+ Sbjct: 393 AFTGAAAKGMRGLLQQADGGTLFLDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDI 452 Query: 210 QLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERADLGRLVLQMMADELGVQAD 269 Q+ICATH+DL L+A G FREDLY+R+ G LP LRER+D L+ +++ +E Sbjct: 453 QVICATHRDLAALVAAGGFREDLYFRLGGARFELPPLRERSDRLALIRRILDEETAHCGV 512 Query: 270 EQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVSDLPEELMQSQGPVLAQV 329 + AA + LL Y WPGN+RQ+ V+RY+CA+ G ++++DLP EL Sbjct: 513 RIELGEAALECLLGYRWPGNVRQLRHVLRYACALCGGATLQLADLPAEL----------- 561 Query: 330 HPLAPRMAERPPSAVVTGGPWPDERTRVIAALNGSRWNISAASRQLGMCRASLYRKLRQL 389 R R P++ G P ER ++ AL RW AA+R+LG+ RA+LYR++R+ Sbjct: 562 -----RGERRTPASACESGGGP-ERDALLDALVRHRWKPMAAARELGISRATLYRRVRRH 615 Query: 390 DI 391 I Sbjct: 616 GI 617 >PA4021 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Pae Pseudomonas aeruginosa Length = 643 Score = 263 bits (671), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 153/315 (48%), Positives = 204/315 (64%), Gaps = 12/315 (3%) Query: 74 LAGGDALMQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCAS 133 L GDA + A R ++ R +P+L+ G+TG+GKE ++A+H R + ++A+NCA+ Sbjct: 333 LCLGDAELAADFRRALKVYARDVPLLLNGETGSGKEAFAKAVHLAGPRAEQAFVALNCAA 392 Query: 134 IPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSE 193 IPE+L ESELFGY G+F+GA GM+GK+QQADGGTLFLDEIGDMPLALQTRLLRVL E Sbjct: 393 IPETLIESELFGYRGGSFTGARKEGMRGKLQQADGGTLFLDEIGDMPLALQTRLLRVLEE 452 Query: 194 REVTPLGALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERADLG 253 R V PLG P VDV+LI ATH+DL L+A GRFREDLYYR+ G V+ LP LRER+D Sbjct: 453 RRVVPLGG-EPEDVDVRLISATHRDLAGLVADGRFREDLYYRLNGMVVSLPPLRERSDRE 511 Query: 254 RLVLQMMADELGVQADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVSD 313 L+ ++A+E Q + + Q LLAY WPGN+RQM V+R A+ R+ + D Sbjct: 512 ELLDYLLAEEARGQRIQ--LDGEVRQGLLAYRWPGNVRQMRTVLRTLVALCEDGRVGLRD 569 Query: 314 LPEELMQSQGPVLAQVHPLAPRMAERPPSAVVTGGPWPDERTRVIAALNGSRWNISAASR 373 LP ++ Q+ + AP A ER ++AAL+G RW++S + Sbjct: 570 LPADIRQALAALPPAAAAPAPAAGNSLDDA---------ERAALLAALDGQRWHVSRVAE 620 Query: 374 QLGMCRASLYRKLRQ 388 QLG+ R +LYRKLR+ Sbjct: 621 QLGISRNTLYRKLRR 635 >RSc3129 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Rso Ralstonia solanacearum Length = 637 Score = 240 bits (612), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 141/307 (45%), Positives = 191/307 (62%), Gaps = 20/307 (6%) Query: 85 VERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCASIPESLAESELF 144 R R+ E +P+L+ G+TGTGKE +RA+H S+R ++AVNCA+IPE+L ESELF Sbjct: 346 FHRALRVFEHDVPLLLHGETGTGKEAFARAVHQASSRAAQPFVAVNCAAIPETLIESELF 405 Query: 145 GYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVTPLGALRP 204 GY G+F+GA GM+GK+QQADGGTLFLDEIGDMPLALQ+RLLRVL ER V P+G Sbjct: 406 GYRGGSFTGARREGMRGKLQQADGGTLFLDEIGDMPLALQSRLLRVLEERAVVPIGG-EA 464 Query: 205 VPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERADLGRLVLQMMADEL 264 VDV+++ A+H+D+ + GRFREDLYYR+ G + LP LRERAD L+ ++A+E Sbjct: 465 QTVDVRIVSASHRDMEARVRDGRFREDLYYRLNGLRITLPPLRERADKAALLAHVLAEE- 523 Query: 265 GVQADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVSDLPEELMQSQGP 324 + + A LLA PWPGN+RQ+ V+R A+ + RI + DLP EL Sbjct: 524 -SRGRPARLDDDARDALLAQPWPGNVRQLRNVLRTLVALSDDGRIRLRDLPPELRPPAMA 582 Query: 325 VLAQVHPLAPRMAERPPSAVVTGGPWPDERTRVIAALNGSRWNISAASRQLGMCRASLYR 384 A PL E+ ++AAL +W ++ A++ LG+ R +LYR Sbjct: 583 SAAAPAPLD-----------------NAEKAALLAALQAQQWRMTHAAKALGISRNTLYR 625 Query: 385 KLRQLDI 391 KLR+ I Sbjct: 626 KLRKHGI 632 >SMb20102 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Sme Sinorhizobium meliloti Length = 627 Score = 239 bits (609), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 133/301 (44%), Positives = 194/301 (64%), Gaps = 32/301 (10%) Query: 96 IPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCASIPESLAESELFGYCKGAFSGAL 155 +P+LI G+TGTGKE+L+RA+H+ S + ++A+NCA+IPE L ESELFGY GAF+GA Sbjct: 354 LPILIQGETGTGKEHLARAIHEGSGL-EGPFVAINCAAIPEQLIESELFGYLPGAFTGAS 412 Query: 156 PGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVTPLGALRPVPVDVQLICAT 215 G KG ++QADGGTLFLDEIGDMPLALQ+RLLRVL+E EV P+G P V ++++ A+ Sbjct: 413 AKGRKGLIEQADGGTLFLDEIGDMPLALQSRLLRVLAEGEVLPVGGTAPRKVRIRIVSAS 472 Query: 216 HQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERADLGRLVLQMMADELGVQADEQLI-A 274 H+ L L++QG FREDLYYR+ L LPALR+R D ++ Q+ L D +LI + Sbjct: 473 HRPLQTLVSQGAFREDLYYRLNAATLTLPALRDRPDFDWVLEQL----LKRHGDGELILS 528 Query: 275 PAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVSDLPEELMQSQGPVLAQVHPLAP 334 PAA L A+ WPGN+R++ VI + A+ +E+ DLP++L+ Sbjct: 529 PAALSALKAHDWPGNIRELDNVIGVAAALAENGVVELGDLPDQLL--------------- 573 Query: 335 RMAERPPSAVVTGGPWPDERTRVIA-ALNGSRWNISAASRQLGMCRASLYRKLRQLDI-P 392 +A GG +E + ++ L WNIS A+R+LG+ R++++R++++ + P Sbjct: 574 ------ANADTVGG---NEASATLSLTLTACNWNISEAARRLGLDRSTVHRQIKRYRLKP 624 Query: 393 H 393 H Sbjct: 625 H 625 >AGl278 [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 627 Score = 231 bits (590), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/327 (43%), Positives = 197/327 (60%), Gaps = 30/327 (9%) Query: 71 IDQLAGGDA-LMQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAV 129 + + GGD ++ L + ++L +P+L+ GQTGTGKE+L+R +HD S ++AV Sbjct: 327 VTERIGGDGPAVRNLRRKVEKLSPARLPILLQGQTGTGKEHLARIIHDASGV-SGRFVAV 385 Query: 130 NCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLR 189 NCA+IPE L ESELFGY GAF+GAL G KG V++A GGTLFLDEIGDMP A Q+RLLR Sbjct: 386 NCAAIPEQLIESELFGYLPGAFTGALAKGRKGLVEEAQGGTLFLDEIGDMPFAAQSRLLR 445 Query: 190 VLSEREVTPLGALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRER 249 VL+E EV P+G P VD ++I A+H+ L +++ G FREDLYYR+ VL LPAL ER Sbjct: 446 VLAEGEVLPVGGSTPQKVDFRVISASHRPLNDMVRTGAFREDLYYRLNAAVLTLPALSER 505 Query: 250 ADLGRLVLQMMADELGVQADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRI 309 D L L + ++ G+ ++ AA +L + WPGN+R++ I ++ A+ + I Sbjct: 506 DDFPWL-LDRILEKHGMPGRPLTLSNAARLTILHHRWPGNIRELDNAIAFAAALCDDGLI 564 Query: 310 EVSDLPEELMQSQGPVLAQVHPLAPRMAERPPSAVVTGGPWPDER-TRVIAALNGSRWNI 368 V DLPE+L P S+ P D R T + A L NI Sbjct: 565 TVEDLPEQLT--------------------PASST----PMIDSRGTDLRALLAACNGNI 600 Query: 369 SAASRQLGMCRASLYRKLRQLDI--PH 393 S A+R+LG+ R +L+R++R+L I PH Sbjct: 601 SEAARRLGVDRTTLHRRMRRLGIGKPH 627