BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3718.p (761 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 294 5e-79 CC0896 Non COG 256 2e-67 AGl1027 [T] COG5001 Predicted signal transduction protein contai... 250 8e-66 RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum 236 1e-61 SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti 224 7e-58 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 294 bits (753), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 189/439 (43%), Positives = 256/439 (58%), Gaps = 17/439 (3%) Query: 314 GLIHQLEQEKSRAYQLASHDYLTGIPNRMLFYELAATELSRARRSRNLYALFFLDLDKFK 373 L+ + + ++R QLA +D LTG+ NR F E L+ A +R L ++DLD FK Sbjct: 326 ALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLA-APEAR--LGLLYIDLDGFK 382 Query: 374 LINDTLGHAVGDALLQEVARRLRAAV-REYDLVARLGGDEFVVLVSEIRDEETVAEIADK 432 L+NDT GH GDALL+ VA+RLRA R +ARLGGDEF VLV D + A +A Sbjct: 383 LVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPH-DDADRAATLATA 441 Query: 433 LVETLRAPYPDLLGCD--VETSPSIGIALYPRDGQSIEALMTNADSAMYTAKSAGAGLYR 490 L+E L APY LG D V SIGIAL P G+ E L+ AD A+Y AK+AG GL R Sbjct: 442 LIEALGAPYA--LGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLAR 499 Query: 491 FYDASLNA-IAVRGLELLGRFRQAIK-DDEFCLHYQPKVELQDYRVVGMEALIRWQHPEH 548 + A + I R L L + R A++ D + YQP V++ +V EAL+RW H E Sbjct: 500 LFCADMETRIQARAL-LEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAER 558 Query: 549 GLIYPGEFIGLAETHDLVQPLGPWIIEAVCRQLAQWRDEGLPLVPVAINVSAKQLNDERL 608 G + P EF+ +AE L+ LG +++ CR+ +W D VA+NVS QL L Sbjct: 559 GWVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRWEDGAR----VAVNVSPMQLGKATL 614 Query: 609 IATVHDALRRYHLSADLLEIEVTESCFISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSL 668 TVH AL L+ D LEIEVTE+ I + ++ + L +L D G+R+ LDD+GTGYSSL Sbjct: 615 AQTVHAALIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSL 674 Query: 669 SHIKTLPVYALKIDRSFVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLK 728 +H++ P +KIDRSFVRD+ ++V + L R LG+ VAEGVET+ + ++ Sbjct: 675 AHLRAFPFDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIR 734 Query: 729 LMGCDEVQGFYLQRPVAPA 747 GC E QG+Y RP AP+ Sbjct: 735 EAGCTEAQGYYYGRP-APS 752 >CC0896 Non COG Length = 677 Score = 256 bits (653), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 170/477 (35%), Positives = 255/477 (53%), Gaps = 24/477 (5%) Query: 284 IVVLSGGLISLAHRRRYLYEKLVYSE---REKSGLIHQLEQEKSRAYQLASHDYLTGIPN 340 IVV+S +I + + + LV S +K+ +L E R LA+ D LT +PN Sbjct: 183 IVVVSAVMIVILLTQYREFSDLVQSRVTLTQKAEEARRLSDENDR---LANLDSLTDLPN 239 Query: 341 RMLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALLQEVARRLRAAVR 400 R ++ + AR+S + +DLD FK IND GHA GD LL EV RRL+A Sbjct: 240 RRRYFAELDARVEAARQSGRGFVAGVIDLDDFKPINDAFGHATGDRLLIEVGRRLKAFDG 299 Query: 401 EYDLVARLGGDEFVVLVSEIRDEETVAEIADKLVETLRAPYPDLLGCDVETSPSIGIALY 460 L ARLGGDEF +++ + + + + +L +L+A Y DL G + SIG + Sbjct: 300 APILAARLGGDEFGLIIDAALEPDALRVLGRELCASLQATY-DLRGVRAQVGASIGFCPF 358 Query: 461 PRDGQSIEALMTNADSAMYTAKSAGAGLYRFYDASLNAIAVRGLELLGR-FRQAIKDDEF 519 P + E L AD A+Y AK G G +D A A+R + ++ + R A + E Sbjct: 359 PSGADTSEQLFERADYALYHAKQNGKGAAVVFDERHEA-AIRDMAVVEQALRSADLEQEM 417 Query: 520 CLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEFIGLAETHDLVQPLGPWIIEAVCR 579 +H+QP V++ R + +EAL RW PE G I P FIG AE + + ++ R Sbjct: 418 SVHFQPLVDIVSQRTIALEALARWTSPEIGPIRPDVFIGAAERSGQIVEITRLLVAKALR 477 Query: 580 QLAQWRDEGLPL-VPVAINVSAKQL----NDERLIATVHDALRRYHLSADLLEIEVTESC 634 ++ W P+ V V+IN+SA+ + N RL+A V ++ H ++ E+TE+ Sbjct: 478 EMRAW-----PMDVRVSINLSARDIASMENVRRLLAIVSESCIAPHR----IDFEITETA 528 Query: 635 FISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPVYALKIDRSFVRDIRNDNS 694 + D +QAR L + G+R LDD+GTG+SSLSH++ LP+ LKID SFV DI ++ + Sbjct: 529 IVCDFDQARDALAAFHELGVRTALDDFGTGHSSLSHLRLLPLDKLKIDASFVSDIEHNPT 588 Query: 695 DGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPVAPAQLVP 751 IV + + L RNL ++ V EGVET Q + +G +QG++ RP+ PA+ VP Sbjct: 589 SEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQGYHFARPM-PAEAVP 644 >AGl1027 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 648 Score = 250 bits (639), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 161/470 (34%), Positives = 250/470 (53%), Gaps = 19/470 (4%) Query: 278 ILISLLIVVLSGGLISLAHRRRYLYEKLVYSEREKSGLIHQLEQEKSRAYQLASHDYLTG 337 I I++ ++++ G++S+ +E++V S++ L + LA+ D LTG Sbjct: 176 IAIAINVLLVCAGMMSILLTNYRNFERMVISQQRTEAL-------SNENLLLANIDSLTG 228 Query: 338 IPNRMLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALLQEVARRLRA 397 +PNR F+ EL+ AR AL +DLD FK +ND GH+VGD LL V++RL A Sbjct: 229 LPNRRAFFAHLEVELANAREKGTRLALGVIDLDGFKPVNDLYGHSVGDRLLINVSKRLTA 288 Query: 398 AVREYDLVARLGGDEFVVLVSEIRDEETVAEIADKLVETLRAPYPDLLGCDVETSPSIGI 457 ++ RLGGDEF ++ I D+ + A+ + E LRAPY G V S S+GI Sbjct: 289 NLKASKAF-RLGGDEFAIVAPIIPDDAQLVANANAISEELRAPYHMPEGT-VHVSASMGI 346 Query: 458 ALYPRDGQSIEALMTNADSAMYTAKSAGAGLYRFYDASLNA---IAVRGLELLGRFRQAI 514 A++P ++E L AD A+Y AK G +DA I R LL +Q+ Sbjct: 347 AVFPHLASTLEQLFDRADYALYHAKKTRRGDAVLFDAEHEKQINIEARIEHLL---KQSD 403 Query: 515 KDDEFCLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEFIGLAETHDLVQPLGPWII 574 +E + +QP V+++D + G EAL RW P G + P +F +AE +V L ++ Sbjct: 404 LKNELSVMFQPIVDIRDGKTAGFEALARWHSPVLGHVPPAQFFAIAERAGIVGSLTRPLL 463 Query: 575 EAVCRQLAQWRDEGLPLVPVAINVSAKQLNDERLIATVHDALRRYHLSADLLEIEVTESC 634 + + W P + ++ N+SA+ LN + ++ + L++E+TE+ Sbjct: 464 KMALASASTWD----PSLRLSFNLSAQDLNCHEGVLSLIGIIENSCFDTRRLDLEITETA 519 Query: 635 FISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPVYALKIDRSFVRDIRNDNS 694 F D EQ RQ+++ LR G I LDD+GTGYSSL+ + LP+ +KIDRSFV D+ + Sbjct: 520 FAHDFEQVRQSVDMLRRLGCGISLDDFGTGYSSLTRLHALPLTKIKIDRSFVTDLHEKPA 579 Query: 695 DGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPV 744 IV S + L+R++ L+ V EGVET +L L+ +G VQG+ P+ Sbjct: 580 SYKIVKSLLALSRDMELECVVEGVETSAELTTLEGLGATLVQGYIYAPPL 629 >RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 282 Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 118/256 (46%), Positives = 162/256 (63%) Query: 489 YRFYDASLNAIAVRGLELLGRFRQAIKDDEFCLHYQPKVELQDYRVVGMEALIRWQHPEH 548 Y F++AS+N + L+L+ R A++ E LHYQPK VVG+EAL+RWQHPE Sbjct: 1 YCFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPER 60 Query: 549 GLIYPGEFIGLAETHDLVQPLGPWIIEAVCRQLAQWRDEGLPLVPVAINVSAKQLNDERL 608 GL+ P FI LAE L+ PLG W+++ CRQ+AQWR EG +A+N+SA Q L Sbjct: 61 GLVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAAL 120 Query: 609 IATVHDALRRYHLSADLLEIEVTESCFISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSL 668 + TV D L R+ L L +E+TES + D + + L++L G+RI +DD+GTGYSSL Sbjct: 121 VDTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSL 180 Query: 669 SHIKTLPVYALKIDRSFVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLK 728 ++K LP LKIDR FVRD+ +D+ D IV++ V L + L L++VAEGVET Q L Sbjct: 181 LYLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLT 240 Query: 729 LMGCDEVQGFYLQRPV 744 +GC +QG L RP+ Sbjct: 241 RLGCHALQGNLLGRPM 256 >SMc00038_4 [T] COG2200 FOG Sme Sinorhizobium meliloti Length = 257 Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 152/235 (64%) Query: 510 FRQAIKDDEFCLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEFIGLAETHDLVQPL 569 R+A+ +EF LH+QP++ L+ R+ EAL+RWQHP G+I P FI LAE L+ P+ Sbjct: 9 LREALAREEFLLHFQPQMSLETGRIFAAEALLRWQHPVRGIISPAAFIPLAEETGLIVPI 68 Query: 570 GPWIIEAVCRQLAQWRDEGLPLVPVAINVSAKQLNDERLIATVHDALRRYHLSADLLEIE 629 G W++ CRQL W+D GLP + V++NVSA+Q + A V L L A LE+E Sbjct: 69 GDWVLRTACRQLKAWQDAGLPPLIVSVNVSARQFRERNWAARVAAVLEETCLEARYLELE 128 Query: 630 VTESCFISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPVYALKIDRSFVRDI 689 +TES + D+ A T+ L G+ + +DD+GTGYSSLS +K PV LKIDRSFV DI Sbjct: 129 LTESLIMQDVPGAIATMHALEAIGVHLAIDDFGTGYSSLSALKRFPVRRLKIDRSFVTDI 188 Query: 690 RNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPV 744 +D D I ++ ++LA+ LGL+V+AEGVET Q+ L+ GC E+QG++ +P+ Sbjct: 189 PHDADDMAITSAIISLAQKLGLRVIAEGVETEAQVEFLQKSGCGEIQGYFFSQPL 243