BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3711.p         (75 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RP216 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 R...    29   2.2  

>RP216 [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1 Rpr
           Rickettsia prowazekii
          Length = 453

 Score = 29.3 bits (64), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 24  LQMSPREFDAIAQVWDDEGGPGFNVAGVP 52
           L+  P +  AI  +W+ E G  FN+ G+P
Sbjct: 246 LKYQPVKVSAIEGIWNTEKGASFNLIGLP 274