BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3710.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SP2158 [G] COG2407 L-fucose isomerase and related proteins Spn S...    28   3.8  
alr4846 [R] COG0496 Predicted acid phosphatase Nos Nostoc sp. PC...    28   4.4  
RSc1494 [L] COG0582 Integrase Rso Ralstonia solanacearum               27   7.7  
all2038 Non COG                                                        27   9.7  

>SP2158 [G] COG2407 L-fucose isomerase and related proteins Spn
           Streptococcus pneumoniae TIGR4
          Length = 588

 Score = 28.5 bits (62), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 44  DNKTDP--PTLWFVAETNGGRLLKIVYVFKN 72
           DN+TDP  PT WF     G    K VY   N
Sbjct: 489 DNRTDPGWPTTWFAPRLTGKGAFKSVYDVMN 519


>alr4846 [R] COG0496 Predicted acid phosphatase Nos Nostoc sp. PCC 7120
          Length = 265

 Score = 28.5 bits (62), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 14  LNRKVPPVSEDEIAECFANRCGVNLLDEREDNKTDP 49
           LN  +PPV  +EIA     R GV    +  D +TDP
Sbjct: 164 LNVNIPPVEWEEIAGVKLTRQGVRRYVDVFDKRTDP 199


>RSc1494 [L] COG0582 Integrase Rso Ralstonia solanacearum
          Length = 233

 Score = 27.3 bits (59), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 2   EALSISLGVRTKLNRKVPPVSEDEIAECFANRCGVN 37
            A S+  G+   ++ +V PVS D + + ++ RCG N
Sbjct: 153 RAASMLAGLPRHISGQVFPVSADAVKKSYSTRCGPN 188


>all2038 Non COG
          Length = 743

 Score = 27.3 bits (59), Expect = 9.7,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 42  REDNKTDPPTLWFVAETNGGRLLKI----VYVFKNGTHYLKTAYDPNEIEIAIYE 92
           +  NK    T W      G + ++I    +YV  NGT Y+ + +D    E+ IY+
Sbjct: 83  KTSNKAAYKTSWIGNTFGGKKWVQIQMEGIYVTPNGTVYVNSHWDEAGREVGIYK 137