BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3705.p (296 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1265 [G] COG1175 ABC-type sugar transport systems, permease c... 405 e-113 SMb20417 [G] COG1175 ABC-type sugar transport systems, permease ... 359 3e-99 YPO3795 [G] COG1175 ABC-type sugar transport systems, permease c... 329 4e-90 STM3556 [G] COG1175 ABC-type sugar transport systems, permease c... 323 4e-88 AGl3247 [G] COG1175 ABC-type sugar transport systems, permease c... 323 4e-88 >RSc1265 [G] COG1175 ABC-type sugar transport systems, permease components Rso Ralstonia solanacearum Length = 293 Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust. Identities = 204/293 (69%), Positives = 242/293 (82%) Query: 3 VEKRARFTSKWLPYLLVAPQIIITLLFFFWPAVQALVQSMLLENPFGGYSEFVWFDNFKT 62 +EKR F S+WLPY+LVAPQI +TL+FFFWPA QAL QS+L ++ FG +FV +NF Sbjct: 1 MEKRVVFRSRWLPYVLVAPQIAVTLVFFFWPAGQALYQSLLRQDAFGMNLDFVGLENFAD 60 Query: 63 LFADPTYLEAFRTTAVFSALVAFFGLALSLLLAVFADRVRRGAALYKTFLIWPYAVSPVV 122 LFADPTYL +FRTTAVF+ VA GL+ SL LA FADR RGAA YK LIWPYAV+P V Sbjct: 61 LFADPTYLGSFRTTAVFAIGVAVVGLSTSLALAYFADRALRGAAFYKMLLIWPYAVAPAV 120 Query: 123 VGVLWMFLLSPSLGILSHVLAWLGLPWDYMINGTHAMILIVVAAIWKQISYNFLFFLAGL 182 GVLW FL +PSLGI+S V+ +G+ W++++NG A++L+VV A WKQISYNFLFFLAGL Sbjct: 121 AGVLWSFLFNPSLGIVSFVIRRMGVDWNFVLNGGQALLLVVVIAAWKQISYNFLFFLAGL 180 Query: 183 QSIPKSLIEAAAIDGAGPVKRFFTIVFPLLSPTTFFLFVVNVVYAFFDTFVIVDATTHGG 242 QSIPKSLIEAAAIDGAGP KRF++IVFPLLSPTTFFL VVNVVYAFFDTF I+D+ T GG Sbjct: 181 QSIPKSLIEAAAIDGAGPWKRFWSIVFPLLSPTTFFLMVVNVVYAFFDTFAIIDSVTQGG 240 Query: 243 PGKDTEILVYKVFVDGFRGGDLGGSAAQSVVLMAVVILLTVVQFKYVEKKVQY 295 P K TE LV+KV+ DG RG D+GGSAAQSV+LMAVVI+LT+VQF+YVE+KVQY Sbjct: 241 PFKATETLVFKVYQDGVRGLDIGGSAAQSVILMAVVIVLTIVQFRYVERKVQY 293 >SMb20417 [G] COG1175 ABC-type sugar transport systems, permease components Sme Sinorhizobium meliloti Length = 293 Score = 359 bits (922), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 176/292 (60%), Positives = 223/292 (76%) Query: 5 KRARFTSKWLPYLLVAPQIIITLLFFFWPAVQALVQSMLLENPFGGYSEFVWFDNFKTLF 64 +R F +K LPYLLVAPQI++T++FFFWPA QAL QS++ E+PFG S FV F NF + Sbjct: 2 QRVVFPNKILPYLLVAPQIVLTIVFFFWPASQALYQSVIREDPFGLKSGFVGFANFSAVL 61 Query: 65 ADPTYLEAFRTTAVFSALVAFFGLALSLLLAVFADRVRRGAALYKTFLIWPYAVSPVVVG 124 ++ YL + + T +FS L A + ++LLLA ADRV RG Y+T LIWPYAV+P V G Sbjct: 62 SEANYLNSLKVTVIFSVLTALLAMGVALLLATAADRVVRGKTFYRTLLIWPYAVAPAVAG 121 Query: 125 VLWMFLLSPSLGILSHVLAWLGLPWDYMINGTHAMILIVVAAIWKQISYNFLFFLAGLQS 184 +LW+F+ +P++G +++L G WD ++NG HAMILIVVAA WKQISYNFLFF+AGLQ+ Sbjct: 122 MLWLFMFNPAMGTFAYMLRRNGFHWDPLLNGNHAMILIVVAAAWKQISYNFLFFVAGLQA 181 Query: 185 IPKSLIEAAAIDGAGPVKRFFTIVFPLLSPTTFFLFVVNVVYAFFDTFVIVDATTHGGPG 244 IPKSLIEAAAIDGA +RF+TI+FPLL+PTTFFL VVN VYAFFDTF I+ + T GGP Sbjct: 182 IPKSLIEAAAIDGARGTRRFWTIIFPLLAPTTFFLLVVNTVYAFFDTFGIIHSVTGGGPA 241 Query: 245 KDTEILVYKVFVDGFRGGDLGGSAAQSVVLMAVVILLTVVQFKYVEKKVQYA 296 + TE LVYKV+ DGF +LG SAAQSV+LMA+VI LT QF++VEK+V Y Sbjct: 242 RATETLVYKVYNDGFVNLNLGSSAAQSVILMAIVIGLTAFQFRFVEKRVHYG 293 >YPO3795 [G] COG1175 ABC-type sugar transport systems, permease components Ype Yersinia pestis Length = 295 Score = 329 bits (844), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 173/291 (59%), Positives = 216/291 (74%) Query: 5 KRARFTSKWLPYLLVAPQIIITLLFFFWPAVQALVQSMLLENPFGGYSEFVWFDNFKTLF 64 R F+ WLPYLLV PQ+ IT +FF WPA +AL S+ +PFG SEFV NF LF Sbjct: 4 SRPGFSCSWLPYLLVLPQLAITAIFFLWPAGEALWYSVQTLDPFGLSSEFVGLSNFIQLF 63 Query: 65 ADPTYLEAFRTTAVFSALVAFFGLALSLLLAVFADRVRRGAALYKTFLIWPYAVSPVVVG 124 D YL +F TT +FSALVA GL +SL LA + V RG+ LY+T LI PYAV+P V Sbjct: 64 QDEYYLASFYTTLIFSALVAGIGLIVSLFLAAMVNYVLRGSRLYQTLLILPYAVAPAVAA 123 Query: 125 VLWMFLLSPSLGILSHVLAWLGLPWDYMINGTHAMILIVVAAIWKQISYNFLFFLAGLQS 184 VLW+FL P LG+++H LA LG W++ N AM L+V+A++WKQISYNFLFFLA LQS Sbjct: 124 VLWIFLFDPGLGLITHALAKLGYSWNHAQNSGQAMFLVVLASVWKQISYNFLFFLAALQS 183 Query: 185 IPKSLIEAAAIDGAGPVKRFFTIVFPLLSPTTFFLFVVNVVYAFFDTFVIVDATTHGGPG 244 IPKSL+EAAAIDGAGPV+RFF +V PL+SP +FFL VVN+VYAFFDTF ++DA T GGP Sbjct: 184 IPKSLVEAAAIDGAGPVRRFFNLVLPLISPVSFFLLVVNLVYAFFDTFPVIDAATGGGPV 243 Query: 245 KDTEILVYKVFVDGFRGGDLGGSAAQSVVLMAVVILLTVVQFKYVEKKVQY 295 + T L+YK++ +GF G DL SAAQSV+LM +VI LTV+QF++VE+KV+Y Sbjct: 244 QATTTLIYKIYREGFAGLDLSSSAAQSVILMLLVIGLTVIQFRFVERKVRY 294 >STM3556 [G] COG1175 ABC-type sugar transport systems, permease components Sty Salmonella typhimurium LT2 Length = 295 Score = 323 bits (827), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 167/292 (57%), Positives = 214/292 (73%) Query: 4 EKRARFTSKWLPYLLVAPQIIITLLFFFWPAVQALVQSMLLENPFGGYSEFVWFDNFKTL 63 R F S+WLPYLLVAPQ++IT++FF WPA +AL S+ +PFG S+FV +NF L Sbjct: 3 SSRPVFRSRWLPYLLVAPQLVITVIFFIWPAGEALWYSLQSVDPFGFSSQFVGLENFVAL 62 Query: 64 FADPTYLEAFRTTAVFSALVAFFGLALSLLLAVFADRVRRGAALYKTFLIWPYAVSPVVV 123 F D YL+AF TT FSALV F GL +SL A D V RG+ Y+T ++ PYAV+P V Sbjct: 63 FHDSYYLDAFWTTIKFSALVTFSGLLVSLFFAALVDYVVRGSRFYQTLMLLPYAVAPAVA 122 Query: 124 GVLWMFLLSPSLGILSHVLAWLGLPWDYMINGTHAMILIVVAAIWKQISYNFLFFLAGLQ 183 VLW+FL +P G+++H L G W++ N AM L+V A++WKQISYNFLFF A LQ Sbjct: 123 AVLWIFLFNPGRGLITHFLGEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQ 182 Query: 184 SIPKSLIEAAAIDGAGPVKRFFTIVFPLLSPTTFFLFVVNVVYAFFDTFVIVDATTHGGP 243 SIP+SL+EAAAIDGAGP++RFF + PL++P +FFL VVN+VYAFFDTF ++DA T GGP Sbjct: 183 SIPRSLVEAAAIDGAGPIRRFFRLSLPLIAPVSFFLLVVNLVYAFFDTFPVIDAATAGGP 242 Query: 244 GKDTEILVYKVFVDGFRGGDLGGSAAQSVVLMAVVILLTVVQFKYVEKKVQY 295 + T L+YK++ +GF G DL SAAQSVVLM +VI+LTVVQF+YVE KV+Y Sbjct: 243 VQATTTLIYKIYREGFTGLDLSASAAQSVVLMFLVIILTVVQFRYVESKVRY 294 >AGl3247 [G] COG1175 ABC-type sugar transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 329 Score = 323 bits (827), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 171/288 (59%), Positives = 217/288 (75%) Query: 9 FTSKWLPYLLVAPQIIITLLFFFWPAVQALVQSMLLENPFGGYSEFVWFDNFKTLFADPT 68 F +K LPYLLVAPQII+T++FFFWPA QAL QS + E+ FG S FV NF + +D + Sbjct: 42 FPNKILPYLLVAPQIILTVIFFFWPASQALYQSTMREDAFGLSSNFVGLANFSAVLSDES 101 Query: 69 YLEAFRTTAVFSALVAFFGLALSLLLAVFADRVRRGAALYKTFLIWPYAVSPVVVGVLWM 128 YL + + T +FS L A + L+LLLA ADRV RG Y+T +I PYAV+P V G+LW+ Sbjct: 102 YLNSLKVTVIFSVLTALVSMGLALLLATAADRVVRGKGFYRTMMIMPYAVAPAVAGMLWL 161 Query: 129 FLLSPSLGILSHVLAWLGLPWDYMINGTHAMILIVVAAIWKQISYNFLFFLAGLQSIPKS 188 F+ +P++G LS++L G+ WD +++G AM+L+V AA WKQISYNFLFF+AGLQ+IPKS Sbjct: 162 FMFNPAMGTLSYILRRNGIMWDPLLDGNQAMLLVVAAAAWKQISYNFLFFVAGLQAIPKS 221 Query: 189 LIEAAAIDGAGPVKRFFTIVFPLLSPTTFFLFVVNVVYAFFDTFVIVDATTHGGPGKDTE 248 L+EAA+IDGA +RF+TIVFPLL+PTTFFL VVN VYAFFDTF I+ A T GGP K TE Sbjct: 222 LLEAASIDGARGSRRFWTIVFPLLAPTTFFLLVVNTVYAFFDTFGIIHAVTGGGPAKATE 281 Query: 249 ILVYKVFVDGFRGGDLGGSAAQSVVLMAVVILLTVVQFKYVEKKVQYA 296 LVYKV+ DGF +LG SAAQSV+LM +VI LT QF++VEK+V Y Sbjct: 282 TLVYKVYNDGFVNLNLGSSAAQSVILMVIVIALTAFQFRFVEKRVHYG 329