BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3703.p (364 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1267 [G] COG3839 ABC-type sugar transport systems, ATPase com... 434 e-121 YPO3793 [G] COG3839 ABC-type sugar transport systems, ATPase com... 411 e-114 STM3554 [G] COG3839 ABC-type sugar transport systems, ATPase com... 405 e-113 ZugpC [G] COG3839 ABC-type sugar transport systems, ATPase compo... 401 e-111 ECs4296 [G] COG3839 ABC-type sugar transport systems, ATPase com... 401 e-111 >RSc1267 [G] COG3839 ABC-type sugar transport systems, ATPase components Rso Ralstonia solanacearum Length = 365 Score = 434 bits (1116), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/366 (62%), Positives = 268/366 (73%), Gaps = 8/366 (2%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA + L+ V+K Y + V+HGID EI DGEFIV+VGPSGCGKSTLLRMVAGLE ++ Sbjct: 1 MAKLSLRNVQKHYAG----LQVVHGIDMEIGDGEFIVIVGPSGCGKSTLLRMVAGLEAIT 56 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 G++ IG RVVN+LEP ERDIAMVFQNYALYPHMTV+ NMAYGLKI+GL KSEI RVQ+ Sbjct: 57 GGEVWIGDRVVNELEPAERDIAMVFQNYALYPHMTVFDNMAYGLKIRGLPKSEILARVQQ 116 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA ILELG LLER PRQLSGGQRQRVAMGRAIVR+PAVFLFDEPLSNLDAKLRVQMRLE+ Sbjct: 117 AAGILELGKLLERKPRQLSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEL 176 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 ++LH LRTTSLYVTHDQVEAMTL RM+V++ G EQIGTP EVYARPA+TFVA FIGS Sbjct: 177 KELHRRLRTTSLYVTHDQVEAMTLADRMMVLSGGRVEQIGTPLEVYARPASTFVAGFIGS 236 Query: 241 PPMNLLR-GKLSADGGSFEVDQGGAADTVRLPQALPAAAG--QERILGVRPEHLLPILDG 297 PPMNL+ + + +G VD A D LP + ++G+RPEH+ P Sbjct: 237 PPMNLVPVSRHAGEGAQIRVDGAQAGDAPATLGHLPMGLHLPEHALMGLRPEHIEPCA-A 295 Query: 298 SEAQLALEVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAADVHWFDV 357 A +EV LVEALGA+ + G +V+R + V G R+ + A +HWFD Sbjct: 296 DRAIAFVEVRLVEALGADAFAYGALAGHPVVVRLDPHASVKAGDRLPITASADHLHWFDP 355 Query: 358 QSTHRI 363 Q+T RI Sbjct: 356 QTTRRI 361 >YPO3793 [G] COG3839 ABC-type sugar transport systems, ATPase components Ype Yersinia pestis Length = 357 Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust. Identities = 221/365 (60%), Positives = 264/365 (72%), Gaps = 12/365 (3%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA + L+ V K+Y VI ID ++ADGEFIVMVGPSGCGKSTLLRMVAGLE + Sbjct: 1 MACLKLQAVTKSYDG---VTPVIKQIDLDVADGEFIVMVGPSGCGKSTLLRMVAGLERTT 57 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 +G I IG + V DLEPK+R IAMVFQNY LYPHM V+ NMAYGLKI+G K +I +RV Sbjct: 58 TGDIYIGDQRVTDLEPKDRGIAMVFQNYVLYPHMNVFDNMAYGLKIRGFGKEQIRQRVDE 117 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA ILEL LL+R PR+LSGGQRQRVAMGRAIVR+PAVFLFDEPLSNLDAKLRVQMRLE+ Sbjct: 118 AARILELQPLLKRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEL 177 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Q+LH L+TTSLYVTHDQVEAMTL QR+IVMN+GVAEQIGTP+EVY RPA+ FVASFIGS Sbjct: 178 QQLHRRLKTTSLYVTHDQVEAMTLAQRVIVMNKGVAEQIGTPSEVYKRPASLFVASFIGS 237 Query: 241 PPMNLLRGKLSADGGSFEVDQGGAADTVRLPQALPAAAGQERILGVRPEHLLPILDGSEA 300 P MNLL G +S DG +F + G + +PQ P G+ LG+RPEH I + A Sbjct: 238 PAMNLLDGTVSPDGRTF-ILSDGLTLPLEIPQ--PQWGGRRLTLGIRPEH---IQQTTSA 291 Query: 301 Q-LALEVELVEALGAELLVHARCGGQSLVLRCP-ANVPVSTGQRIGASFGAADVHWFDVQ 358 Q + + + +E LGA+ L H GGQS++ R +PV+ G + A +H+FD Sbjct: 292 QGVPMNLLTLELLGADNLAHGLWGGQSIIARLSHEEMPVA-GSTLHLYLPPAALHFFDTD 350 Query: 359 STHRI 363 S RI Sbjct: 351 SGLRI 355 >STM3554 [G] COG3839 ABC-type sugar transport systems, ATPase components Sty Salmonella typhimurium LT2 Length = 356 Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/363 (58%), Positives = 264/363 (72%), Gaps = 7/363 (1%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA + L+ V K++ + VI + ++ADGEFIVMVGPSGCGKSTLLRMVAGLE V+ Sbjct: 1 MAGLKLQAVTKSWDGKTQ---VIQPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVT 57 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 SG I I ++ V ++EPK+R IAMVFQNYALYPHM+V +NMA+GLKI+G+SK+ I+ERV+ Sbjct: 58 SGDIWIDRKRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGMSKAHIEERVRE 117 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA ILEL LL+R PR+LSGGQRQRVAMGRAIVR+PAVFLFDEPLSNLDAKLRVQMRLE+ Sbjct: 118 AARILELDGLLKRRPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEL 177 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Q LH LRTTSLYVTHDQVEAMTL QR++VMN+GVAEQIGTP EVY +PA+ FVASFIGS Sbjct: 178 QHLHRRLRTTSLYVTHDQVEAMTLAQRVMVMNKGVAEQIGTPVEVYEKPASRFVASFIGS 237 Query: 241 PPMNLLRGKLSADGGSFEVDQGGAADTVRLPQALPAAAGQERILGVRPEHLLPILDGSEA 300 P MNLL G +SA G FE+ G A + + AG+ LG+RPEH + + +E Sbjct: 238 PAMNLLDGVISASGDRFELPGGLA---LPIGADYRGHAGRNMTLGIRPEH-IALSSQAEG 293 Query: 301 QLALEVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAADVHWFDVQST 360 + L V+ +E LGA+ L H R G Q LV+R + G + H FD ++ Sbjct: 294 GVPLTVDTLEILGADNLAHGRWGDQKLVVRLAHQQRPAAGSTLWLHLPEHQRHLFDGETG 353 Query: 361 HRI 363 R+ Sbjct: 354 QRV 356 >ZugpC [G] COG3839 ABC-type sugar transport systems, ATPase components EcZ Escherichia coli O157:H7 EDL933 Length = 369 Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/363 (57%), Positives = 263/363 (72%), Gaps = 7/363 (1%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA + L+ V K++ + VI + ++ADGEFIVMVGPSGCGKSTLLRMVAGLE V+ Sbjct: 14 MAGLKLQAVTKSWDGKTQ---VIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVT 70 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 G I I + V ++EPK+R IAMVFQNYALYPHM+V +NMA+GLKI+G+ K +I ERV+ Sbjct: 71 EGDICINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGMGKQQIAERVKE 130 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA ILEL LL+R PR+LSGGQRQRVAMGRAIVR PAVFLFDEPLSNLDAKLRVQMRLE+ Sbjct: 131 AARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLEL 190 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Q+LH L+TTSLYVTHDQVEAMTL QR++VMN GVAEQIGTP EVY +PA+ FVASFIGS Sbjct: 191 QQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGTPVEVYEKPASLFVASFIGS 250 Query: 241 PPMNLLRGKLSADGGSFEVDQGGAADTVRLPQALPAAAGQERILGVRPEHLLPILDGSEA 300 P MNLL G+++ +G FE+D G A + L AG++ LG+RPEH + + +E Sbjct: 251 PAMNLLTGRVNNEGTHFELDGGIA---LPLNGGYRQYAGRKMTLGIRPEH-IALSSQAEG 306 Query: 301 QLALEVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAADVHWFDVQST 360 + L ++ +E LGA+ L H R G Q LV+R + G + +H FD ++ Sbjct: 307 GVPLVMDTLEILGADNLAHGRWGEQKLVVRLAHQERPTAGSTLWLHLPENQLHLFDGETG 366 Query: 361 HRI 363 R+ Sbjct: 367 QRV 369 >ECs4296 [G] COG3839 ABC-type sugar transport systems, ATPase components Ecs Escherichia coli O157:H7 Length = 369 Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust. Identities = 210/363 (57%), Positives = 263/363 (72%), Gaps = 7/363 (1%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA + L+ V K++ + VI + ++ADGEFIVMVGPSGCGKSTLLRMVAGLE V+ Sbjct: 14 MAGLKLQAVTKSWDGKTQ---VIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVT 70 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 G I I + V ++EPK+R IAMVFQNYALYPHM+V +NMA+GLKI+G+ K +I ERV+ Sbjct: 71 EGDICINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGMGKQQIAERVKE 130 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 AA ILEL LL+R PR+LSGGQRQRVAMGRAIVR PAVFLFDEPLSNLDAKLRVQMRLE+ Sbjct: 131 AARILELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLEL 190 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Q+LH L+TTSLYVTHDQVEAMTL QR++VMN GVAEQIGTP EVY +PA+ FVASFIGS Sbjct: 191 QQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGTPVEVYEKPASLFVASFIGS 250 Query: 241 PPMNLLRGKLSADGGSFEVDQGGAADTVRLPQALPAAAGQERILGVRPEHLLPILDGSEA 300 P MNLL G+++ +G FE+D G A + L AG++ LG+RPEH + + +E Sbjct: 251 PAMNLLTGRVNNEGTHFELDGGIA---LPLNGGYRQYAGRKMTLGIRPEH-IALSSQAEG 306 Query: 301 QLALEVELVEALGAELLVHARCGGQSLVLRCPANVPVSTGQRIGASFGAADVHWFDVQST 360 + L ++ +E LGA+ L H R G Q LV+R + G + +H FD ++ Sbjct: 307 GVPLVMDTLEILGADNLAHGRWGEQKLVVRLAHQERPTAGSTLWLHLPENQLHLFDGETG 366 Query: 361 HRI 363 R+ Sbjct: 367 QRV 369