BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3700.p         (204 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CT703 [R] COG1160 Predicted GTPases Ctr Chlamydia trachomatis          32   1.3  
VNG1733G [NT] COG0840 Methyl-accepting chemotaxis protein Hbs Ha...    32   1.3  
CAC3687 [K] COG1309 Transcriptional regulator Cac Clostridium ac...    30   3.0  
NMA0611 [D] COG0489 ATPases involved in chromosome partitioning ...    29   5.7  

>CT703 [R] COG1160 Predicted GTPases Ctr Chlamydia trachomatis
          Length = 490

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 50  TQMTSYGDRVHFSMFGSVQKPHYEVINSFDKKMAFDGNHHLH 91
           TQ  SY D+   SM    +KPH  ++N +D        H++ 
Sbjct: 319 TQQLSYQDKRILSMIARYKKPHVILVNKWDLMFGVRMEHYVQ 360


>VNG1733G [NT] COG0840 Methyl-accepting chemotaxis protein Hbs Halobacterium
           sp. NRC-1
          Length = 536

 Score = 31.6 bits (70), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 148 AARAREAVDGEKYAYFKANRHMLPDEINQHSDEISKLMLNGMSAEQAF 195
           AARA +  DG+ +A   A    L +E N+ +DEI  L+ N +S+ Q+ 
Sbjct: 352 AARADQ--DGDGFAVVAAEVKELAEETNEATDEIETLVDNLLSSTQSV 397


>CAC3687 [K] COG1309 Transcriptional regulator Cac Clostridium
           acetobutylicum
          Length = 196

 Score = 30.4 bits (67), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 31/73 (42%)

Query: 118 TGGSGTRSTPRSARAASARSAGGTARPTTAAARAREAVDGEKYAYFKANRHMLPDEINQH 177
           T G  T+S   +A        G T   +   A   E   G  Y+YFK  + +  + +  +
Sbjct: 7   TRGKQTKSKIINAAFELFSEKGYTGTSSNEIASRAEVAIGSFYSYFKDKKQLFIEVLKDY 66

Query: 178 SDEISKLMLNGMS 190
            D ISK+  + ++
Sbjct: 67  YDNISKISFSNIN 79


>NMA0611 [D] COG0489 ATPases involved in chromosome partitioning NmA
           Neisseria meningitidis Z2491
          Length = 375

 Score = 29.3 bits (64), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 82  MAFDGNHHLHRAEETEFGPGNVTP-IFTLDQIKRIVAT----GGSGTRST 126
           M   G+ H+H + +TE G   V P + T+  +K I+A     GG G  +T
Sbjct: 80  MPLTGDTHIHLSMDTEIGTHKVQPGVTTIKGVKNIIAVASGKGGVGKSTT 129