BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3696.p (203 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 187 1e-47 RSc1201 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 154 9e-38 STM1437 [K] COG1309 Transcriptional regulator Sty Salmonella typ... 154 1e-37 ydhM [K] COG1309 Transcriptional regulator Eco Escherichia coli K12 154 1e-37 Z2666 [K] COG1309 Transcriptional regulator EcZ Escherichia coli... 154 1e-37 >PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 194 Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 99/194 (51%), Positives = 128/194 (65%), Gaps = 2/194 (1%) Query: 1 MREHYGQNKRNILQAGRALIAQKGFSGVGLSEILAAADIPKGSFYHYFGSKEQYGRELIE 60 M+ Y ++++L G ++A KGFSGVGL+EIL +A +PKGSFYHYF SKEQ+G+ L+E Sbjct: 1 MKTSYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLE 60 Query: 61 HYVAGYLDRLADVLEARHGGNARERLLTYWGYWLESQCCQQVEQRCLVVKLSAEVADLSE 120 Y YL + A G NARERL++YW WL++ C EQRCLVVKLSAEVADLSE Sbjct: 61 DYFRVYLADMDQRFSA-PGLNARERLMSYWQKWLDNACPPCDEQRCLVVKLSAEVADLSE 119 Query: 121 DMRQALHEGTQRFIERIAVCIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLARLSRDR 180 MR L +G+ IER+ C+ +G +GSL A+ LYQ WLGASLL++L R Sbjct: 120 SMRITLRDGSDGIIERLVGCLGQGRDDGSLAPC-DARHMASALYQLWLGASLLSKLHRSP 178 Query: 181 APMEAAMLVTRHVL 194 P+E AM TR +L Sbjct: 179 GPLETAMQTTRSLL 192 >RSc1201 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 209 Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 83/191 (43%), Positives = 107/191 (56%), Gaps = 1/191 (0%) Query: 7 QNKRNILQAGRALIAQKGFSGVGLSEILAAADIPKGSFYHYFGSKEQYGRELIEHYVAGY 66 + IL AG LI +GFS VGL+EIL A +PKGSFY+YF SKE +G L+E Y Y Sbjct: 18 DTRDRILDAGAELILGRGFSAVGLAEILGRAQVPKGSFYYYFDSKENFGVALLERYFQDY 77 Query: 67 LDRLADVLEARHGGNARERLLTYWGYWLESQCCQQVEQRCLVVKLSAEVADLSEDMRQAL 126 + + ARERL+ Y+ W++ E CL VKLS EV+DLSE MR+ L Sbjct: 78 EAGVVSLFNDTRM-TARERLIRYFAAWIDLHERSACEVTCLAVKLSGEVSDLSEPMRKVL 136 Query: 127 HEGTQRFIERIAVCIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLARLSRDRAPMEAA 186 G R +ERIA +E G+A+GSL V P A LY W+G +LLA+ R AP Sbjct: 137 SAGMTRMVERIAAAVEAGVADGSLAPVADPRGLAEGLYAMWMGGALLAKAHRSTAPFHGC 196 Query: 187 MLVTRHVLVPP 197 + T +L P Sbjct: 197 VAQTEGLLAKP 207 >STM1437 [K] COG1309 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 199 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/190 (43%), Positives = 114/190 (60%), Gaps = 1/190 (0%) Query: 8 NKRNILQAGRALIAQKGFSGVGLSEILAAADIPKGSFYHYFGSKEQYGRELIEHYVAGYL 67 + ++L G L Q+GF+G+GLSE+L A +PKGSFYHYF SKE +G ++E + A Y Sbjct: 9 TREHLLATGEQLCMQRGFTGMGLSELLKTAQVPKGSFYHYFRSKEAFGVAMLERHYACYH 68 Query: 68 DRLADVLEARHGGNARERLLTYWGYWLESQCCQQVEQRCLVVKLSAEVADLSEDMRQALH 127 RL + GN R+RLL ++ L+ C Q CL VKLSAEV DLSEDMR + Sbjct: 69 QRLTAHFTSG-PGNHRDRLLAWYQETLKQFCQQGAISGCLTVKLSAEVCDLSEDMRSTMD 127 Query: 128 EGTQRFIERIAVCIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLARLSRDRAPMEAAM 187 +G Q + +A +E+G LH QPL A +LY WLGA+L A++SR AP+E A+ Sbjct: 128 KGAQEIMALLARALEDGRNSHCLHFTGQPLPQAQVLYALWLGANLQAKISRSAAPLENAL 187 Query: 188 LVTRHVLVPP 197 + ++ P Sbjct: 188 AHVKTIIATP 197 >ydhM [K] COG1309 Transcriptional regulator Eco Escherichia coli K12 Length = 199 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 1 MREHYGQNKR-NILQAGRALIAQKGFSGVGLSEILAAADIPKGSFYHYFGSKEQYGRELI 59 M +H + R ++L G L Q+GF+G+GLSE+L A++PKGSFYHYF SKE +G ++ Sbjct: 1 MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAML 60 Query: 60 EHYVAGYLDRLADVLEARHGGNARERLLTYWGYWLESQCCQQVEQRCLVVKLSAEVADLS 119 E + A Y RL ++L++ G N R+R+L Y+ L C CL VKLSAEV DLS Sbjct: 61 ERHYAAYHQRLTELLQSGEG-NYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLS 119 Query: 120 EDMRQALHEGTQRFIERIAVCIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLARLSRD 179 EDMR A+ +G + I ++ +E G L +PL A +LY WLGA+L A++SR Sbjct: 120 EDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQAQVLYALWLGANLQAKISRS 179 Query: 180 RAPMEAAMLVTRHVLVPPPI 199 P+E A+ ++++ P + Sbjct: 180 FEPLENALAHVKNIIATPAV 199 >Z2666 [K] COG1309 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 199 Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 1 MREHYGQNKR-NILQAGRALIAQKGFSGVGLSEILAAADIPKGSFYHYFGSKEQYGRELI 59 M +H + R ++L G L Q+GF+G+GLSE+L A++PKGSFYHYF SKE +G ++ Sbjct: 1 MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAML 60 Query: 60 EHYVAGYLDRLADVLEARHGGNARERLLTYWGYWLESQCCQQVEQRCLVVKLSAEVADLS 119 E + A Y RL ++L++ G N R+R+L Y+ L C CL VKLSAEV DLS Sbjct: 61 ERHYATYHQRLTELLQSGEG-NYRDRILAYYQQTLNQFCQHGTISGCLTVKLSAEVCDLS 119 Query: 120 EDMRQALHEGTQRFIERIAVCIEEGIAEGSLHTVLQPLATATMLYQQWLGASLLARLSRD 179 EDMR A+ +G + I ++ +E G L +PL A +LY WLGA+L A++SR+ Sbjct: 120 EDMRSAMDKGARGVIALLSQALENGRDSHCLTFCGEPLQQAQVLYALWLGANLQAKISRN 179 Query: 180 RAPMEAAMLVTRHVLVPPPI 199 P+E A+ + ++ P + Sbjct: 180 SEPLENALAHVKTIIATPAV 199