BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3687.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3087 [TK] COG0745 Response regulators consisting of a CheY-li... 261 1e-69 ZkdpE [TK] COG0745 Response regulators consisting of a CheY-like... 252 5e-67 ECs0722 [TK] COG0745 Response regulators consisting of a CheY-li... 252 5e-67 YPO2688 [TK] COG0745 Response regulators consisting of a CheY-li... 251 1e-66 kdpE [TK] COG0745 Response regulators consisting of a CheY-like ... 250 2e-66 >RSc3087 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 234 Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 129/225 (57%), Positives = 165/225 (73%), Gaps = 2/225 (0%) Query: 7 NIVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQ 66 ++ I+D+PHIR+ V++ALE EG V EA G+ EAGTR+PD +ILDLGLPD DG Sbjct: 11 TVLVIDDEPHIRRFVRAALEAEGCEVFEADRVARGLIEAGTRQPDAVILDLGLPDGDGMS 70 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 +I ++R W+ VP+++LSAR E +K++ALDAGADDYL KPFG+ EL+AR+R LRRHA+ Sbjct: 71 LIRDLRTWTEVPVLVLSARVDERDKIDALDAGADDYLTKPFGVGELIARLRVLLRRHAKR 130 Query: 127 SGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 G S + G+V VDL R VSRNGE +HLT IEYRLL+ LL G V+THR+LL Sbjct: 131 GEDGGSIIAF--GDVQVDLARRLVSRNGEPVHLTPIEYRLLAVLLGRRGTVMTHRELLRE 188 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGYRVA 231 WGP+H++ HYLRIYM LR KLE D A+P H+LTE+GVGYR A Sbjct: 189 VWGPAHSDSSHYLRIYMGHLRHKLERDPARPQHLLTEVGVGYRFA 233 >ZkdpE [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 225 Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 122/223 (54%), Positives = 161/223 (72%), Gaps = 3/223 (1%) Query: 7 NIVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQ 66 N++ +ED+ IR+ +++ALE +G V+EA+ + G+ EA TRKPDLIILDLGLPD DG + Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 I ++R WS+VP+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRH Sbjct: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 Query: 127 SGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 S + +V VDL AR + R E +HLT IE+RLL+ LL +AG+V+T RQLL Sbjct: 120 SATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGYR 229 WGP+ E HYLRIYM LRQKLE D A+P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYR 222 >ECs0722 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ecs Escherichia coli O157:H7 Length = 225 Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 122/223 (54%), Positives = 161/223 (72%), Gaps = 3/223 (1%) Query: 7 NIVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQ 66 N++ +ED+ IR+ +++ALE +G V+EA+ + G+ EA TRKPDLIILDLGLPD DG + Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 I ++R WS+VP+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRH Sbjct: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 Query: 127 SGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 S + +V VDL AR + R E +HLT IE+RLL+ LL +AG+V+T RQLL Sbjct: 120 SATAAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGYR 229 WGP+ E HYLRIYM LRQKLE D A+P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPSHFITETGIGYR 222 >YPO2688 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 209 Score = 251 bits (640), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 126/210 (60%), Positives = 153/210 (72%), Gaps = 3/210 (1%) Query: 21 VKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQVISEIRNWSSVPIV 80 ++ ALE EG+ V E++ + G+ EAGTRKPDLIILDLGLPD DG I ++R WS++PI+ Sbjct: 1 MRIALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLNYIQDLRQWSAIPII 60 Query: 81 ILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARASGAGQSSGRYRLGE 140 +LSAR E +KV ALDAGADDYL KPFG+ ELLAR+R LRRH SGA Q S + Sbjct: 61 VLSARNNEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH---SGASQESPLVNFAD 117 Query: 141 VVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVAGWGPSHAEDGHYLR 200 + VDL R V+R GE LHLT IE+RLL+ LL +AG+VIT RQLL WGP++ E HYLR Sbjct: 118 ISVDLINRQVTRAGENLHLTPIEFRLLTALLANAGKVITQRQLLNQVWGPNYVEHSHYLR 177 Query: 201 IYMQRLRQKLEHDAAQPVHILTEIGVGYRV 230 IYM LRQKLE D +P H+LTE GVGYR Sbjct: 178 IYMGHLRQKLEADPTRPKHLLTETGVGYRF 207 >kdpE [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 225 Score = 250 bits (639), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 160/224 (71%), Gaps = 3/224 (1%) Query: 7 NIVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQ 66 N++ +ED+ IR+ +++ALE +G V EA+ + G+ EA TRKPDLIILDLGLPD DG + Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIE 62 Query: 67 VISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 I ++R WS+VP+++LSAR++ES+K+ ALDAGADDYL KPFG+ EL AR+R LRRH Sbjct: 63 FIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH--- 119 Query: 127 SGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 S + +V VDL AR + R E +HLT IE+RLL+ LL +AG+V+T RQLL Sbjct: 120 SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQ 179 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGYRV 230 WGP+ E HYLRIYM LRQKLE D A+P H +TE G+GYR Sbjct: 180 VWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRF 223