BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3677.p (254 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1520 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 177 3e-44 AGl3049 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 167 2e-41 AGl357 [K] COG1802 Transcriptional regulators Atu Agrobacterium ... 160 2e-39 RSc3276 [K] COG1802 Transcriptional regulators Rso Ralstonia sol... 160 3e-39 SMc02425 [K] COG1802 Transcriptional regulators Sme Sinorhizobiu... 158 1e-38 >PA1520 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 259 Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/207 (44%), Positives = 127/207 (61%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVA 98 +Y I AI+E RL PGTKL EE L IFGV+RT +R L+RLAHE +++ PNRGA VA Sbjct: 27 VYAHIFDAILEQRLAPGTKLSEEALGEIFGVSRTIIRRALSRLAHEQVVLLRPNRGAVVA 86 Query: 99 SPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRRAIIRLS 158 SP+ +EAR I ARR +E A+ ++ E +A LR V +E + A DR A IRLS Sbjct: 87 SPSIDEARQILFARRTVERAITELATDNATAERLAELREMVVQEQSSFARGDRGAGIRLS 146 Query: 159 GEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAISEGRTE 218 GEFH+++A+M N + R L S T LII Y+S C+ D+H I+DAI +G E Sbjct: 147 GEFHLKLAEMARNAPLVSFQRSLVSQTSLIIAQYESGGRSHCSFDEHNEILDAIEKGDKE 206 Query: 219 DAIATMLEHLHHIESVLDMSTPQGEDD 245 A+ M+ H+ HI+S L++ + D Sbjct: 207 RAVTLMMHHMEHIDSKLNLESDNASGD 233 >AGl3049 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 266 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 137/234 (58%), Gaps = 8/234 (3%) Query: 17 ENPDNSPLPGQAFSVRPLA-----GDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNR 71 +N ++P+ +V P + AI + + AI++ RL PGTKL E ++ +F V+R Sbjct: 24 KNKQDAPMSLSHITVNPDSSHEDRAQAIRDTLRDAIVDRRLAPGTKLSEAEVGTLFEVSR 83 Query: 72 TRVREVLARLAHEGLIITIPNRGAFVASPTPEEARNIFAARRLLEPALLRHLCEHTRPEH 131 T VR L LA+EGL+ NRGAFV++PTP+EAR +FA+RRL+EP ++ E P Sbjct: 84 TVVRAALQMLAYEGLVKAERNRGAFVSNPTPDEARQVFASRRLIEPGVVDAAIEKITPAA 143 Query: 132 IALLRAHVAEEAQ---ARADNDRRAIIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLI 188 LR H+ EE++ R RRA IR SG+FH+ +A + N ++ K M EL + + L+ Sbjct: 144 AKKLREHLVEESRHQLERGPTARRAEIRASGDFHLMLAALAGNAILEKFMDELVARSSLV 203 Query: 189 IVLYDSPTVPACTHDDHGHIIDAISEGRTEDAIATMLEHLHHIESVLDMSTPQG 242 I LY V +C H+DH ++DA+ A A ML HL HIE+ LD+ +G Sbjct: 204 IALYGRSGVSSCGHNDHADLLDALEAKDAAKARALMLRHLDHIEADLDLRMKEG 257 >AGl357 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 225 Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 126/214 (58%) Query: 39 IYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVA 98 I E++ +I E RL PG +L EE+LA IFGV+R R+R+ L+ L +GL+ +PNRGAFV+ Sbjct: 12 IVEKVWLSIAERRLRPGVQLKEEQLATIFGVSRARIRQALSVLERDGLVTIVPNRGAFVS 71 Query: 99 SPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRRAIIRLS 158 P+ EEAR++F RR +E ++ LC + LR HVA+E A N II+LS Sbjct: 72 KPSVEEARDVFFVRRTVEQCVVERLCRSATKTDLKKLRDHVAKERVANTRNVTTDIIKLS 131 Query: 159 GEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAISEGRTE 218 G FH+ +A+ + + + MR+L S + LI +Y + C D+H I+DAI+ Sbjct: 132 GGFHLLLAETLGSDFLFTTMRDLISRSSLITAVYRNTDRFNCGPDEHAEIVDAIANNDPS 191 Query: 219 DAIATMLEHLHHIESVLDMSTPQGEDDDLEALLG 252 AI M HL H+E+ LD+S + DL A LG Sbjct: 192 RAIHLMTHHLEHVEAELDLSEIRDLSHDLRAALG 225 >RSc3276 [K] COG1802 Transcriptional regulators Rso Ralstonia solanacearum Length = 229 Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 129/220 (58%), Gaps = 1/220 (0%) Query: 34 LAGDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNR 93 L+ + I E I AI+ HRL PGTKL EE LA ++ V+RT++R L LA + LI P+R Sbjct: 10 LSSEGIAEDIAQAIVAHRLPPGTKLREEALARVYHVSRTKIRAALLMLAKDKLIRIEPDR 69 Query: 94 GAFVASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRRA 153 GAFVA P EAR +FA RR+LE AL R P A L H+AEE + A D Sbjct: 70 GAFVARPDETEAREVFAVRRVLEVALAREFIARATPADYARLEQHLAEEHEVAASTDVPR 129 Query: 154 IIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAIS 213 RL +FH+ +AD+V N V+ +M+REL++ + +I ++Y S + ++H +DA Sbjct: 130 RNRLMADFHLLMADVVGNSVLKEMLRELSARSSVITMMYQSTYDAVRSSEEHTAFLDAAK 189 Query: 214 EGRTEDAIATMLEHLHHIESVLDMS-TPQGEDDDLEALLG 252 G E AIA M EH+ H E+ L + TP GE D + ALL Sbjct: 190 RGDVEGAIALMEEHMAHTEASLHFTLTPSGETDLITALLA 229 >SMc02425 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 225 Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 128/219 (58%) Query: 34 LAGDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNR 93 ++ + I ER+ +I E RL PG +L EE+LA IF V+R RVR+ L LA +GL+ IPNR Sbjct: 7 MSVEQIVERVWLSIAERRLRPGVQLKEEQLASIFHVSRARVRQALTVLARDGLVTIIPNR 66 Query: 94 GAFVASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQARADNDRRA 153 GAFV P+ EEAR++F R+ +E ++ LC + + LR HV E A A++ Sbjct: 67 GAFVCKPSVEEARDVFFVRQAVERCVVERLCSSMSKDGVKRLRDHVKNERIANAEDSTTD 126 Query: 154 IIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAIS 213 II+LSG FH+ +A++ + + MR+L + + LI +Y + T C D+H I+ AI+ Sbjct: 127 IIKLSGGFHLLLAELTGSDFLFTTMRDLIARSSLITAVYRNTTRFNCGPDEHADIVKAIA 186 Query: 214 EGRTEDAIATMLEHLHHIESVLDMSTPQGEDDDLEALLG 252 + A+ M HL H+ES LD+S + DL A L Sbjct: 187 AKEAQRAVHLMSHHLEHVESELDLSEIRDFSHDLRAALA 225