BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3670.p (301 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3565 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 341 1e-93 VCA0635 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae 269 7e-72 RSc3280 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 184 2e-46 VCA0991 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae 174 2e-43 RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 173 4e-43 >PA3565 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 306 Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 169/300 (56%), Positives = 218/300 (72%) Query: 1 MIRLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M+R +DL +FV +D+GSLSAAARQ +++PAVASAA+KRLE EL RL ARSTRSLRLTP Sbjct: 1 MLRYDDLQVFVHTSDSGSLSAAARQLEISPAVASAALKRLESELEVRLFARSTRSLRLTP 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPA 120 +G+ +L +AR L + GR + G+ + G L LS PSDFGRNL+ WLDEFQA++P Sbjct: 61 EGDAFLLHARASLRSLEEGRRLLQGGKDQIAGVLQLSAPSDFGRNLLLPWLDEFQARYPQ 120 Query: 121 VNLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPR 180 ++L++ + DRV D++RQPV+VAIRY P DSSLVAL LAPDNRRVLCA+P YLA G PR Sbjct: 121 LSLRLLLGDRVTDLYRQPVDVAIRYGAPADSSLVALPLAPDNRRVLCAAPGYLAERGEPR 180 Query: 181 SPADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAY 240 P DLR+HNCL Y L +H +W F + L + V+GDRVCDD ++V RWA+ G+G+ Y Sbjct: 181 QPDDLREHNCLLYQLGGRVHDRWAFQRGRRSLTLTVAGDRVCDDADVVRRWALAGKGLVY 240 Query: 241 KSRLDVLADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELLGERIGRYLTD 300 KS LDV D+R GRL LLP++ GEA+P+NL+CTHR L+ V LR + ER L + Sbjct: 241 KSWLDVAEDVRAGRLRLLLPEWQGEATPMNLLCTHRAQLTRPVTLLRAFVRERCDALLAE 300 >VCA0635 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae Length = 313 Score = 269 bits (687), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 133/293 (45%), Positives = 188/293 (64%) Query: 1 MIRLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M L DL +FV A GS S AA +T A SAA++RLE ++ L RSTR +RLT Sbjct: 1 MKALNDLNLFVETARQGSFSKAANSLSLTTAAVSAAIRRLEEQVQFPLFVRSTRHIRLTH 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPA 120 +GE +L + LA + G D +A R + G L +S PSD GRNL+ W+DEF A HP Sbjct: 61 EGEIFLAKTQTALATLQEGLDQIACARGQLAGQLHISAPSDLGRNLLLDWIDEFIALHPN 120 Query: 121 VNLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPR 180 V +++ +SDR+ DM+ PV++AIRY P DS+LVA+ L N RVLCASP+YLA H Sbjct: 121 VTVKLDLSDRLTDMYANPVDIAIRYGQPADSNLVAMLLCDSNERVLCASPEYLAAHPPIL 180 Query: 181 SPADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAY 240 P DL+ HNCL ++L+DTLH++W ++G + V G+ C+DGE+VHR AV G+GIA Sbjct: 181 HPDDLQHHNCLCFMLADTLHNKWILSRNGETHSVVVQGNPACNDGEVVHRLAVKGKGIAN 240 Query: 241 KSRLDVLADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELLGER 293 KS +D+ D+ +GRL +LP++ P+ +VC R ++PT+RA +E + E+ Sbjct: 241 KSLMDISQDIIDGRLVRILPEWESGPVPIYMVCADRRLITPTIRAFQEFIREK 293 >RSc3280 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 303 Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 150/262 (57%), Gaps = 1/262 (0%) Query: 1 MIRLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M +L+ + F+ ++GS++AAA DVTP + + LE LG RLL RSTR + +T Sbjct: 1 MDKLKQIEAFIAVVEHGSMAAAALTQDVTPVMIGRRINALEARLGVRLLHRSTRRIAVTE 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPA 120 G +++ + L+E++ VA GR G L +S P+ FGR + F +P Sbjct: 61 QGAVFMEQCKKALSELDRAELLVAEGRHKATGHLIVSAPAAFGRKHVAPHAPAFLRANPD 120 Query: 121 VNLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPR 180 V L ++DRV D+ R+ ++ IR D + VA+ LA N+RV+C +PDY ARHG PR Sbjct: 121 VRLSFNLTDRVVDLVREGYDLGIRIGGAIDPNFVAIRLA-SNQRVVCGTPDYFARHGVPR 179 Query: 181 SPADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAY 240 + DL +HNCL + L W F +G + ++VSG+ C+DGEL+HRW +G G+ + Sbjct: 180 TLDDLSRHNCLAFNLQGGQQRGWYFQHNGRMVTVRVSGNLDCNDGELLHRWMGEGLGLGW 239 Query: 241 KSRLDVLADLRNGRLEALLPDY 262 +S ++ +L +G L +L DY Sbjct: 240 RSTWEIQPELESGALMTVLDDY 261 >VCA0991 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae Length = 308 Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/263 (37%), Positives = 144/263 (54%), Gaps = 1/263 (0%) Query: 1 MIRLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M + D+ +F N L+AA R+ ++PA +A ++ LE G +LL RSTR L LT Sbjct: 1 MDKFADMVLFASIVKNQGLAAAGRELSLSPATVTARLQALEDRYGVKLLNRSTRHLSLTE 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPA 120 G Y Q +L V + + G + V GTL +S P D G+ + L F Q+P Sbjct: 61 SGVLYHQACLEILNSVRETENLLQTGSKEVRGTLKVSAPRDIGKQHIAPILAAFTEQYPE 120 Query: 121 VNLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPR 180 V + ++D ++++ ++V IRY DSSL++ LA +RRVLCASP YLAR G P+ Sbjct: 121 VVPYLYLNDNISNLAESGLDVVIRYGELADSSLISRKLAT-SRRVLCASPAYLARKGIPK 179 Query: 181 SPADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAY 240 +P DL QH+CL + S+ W F ++ + V DDGE++ +WA+ G GIA Sbjct: 180 TPQDLAQHDCLAMVRSNEEMKTWHFQENEQHKVITVVPKSFADDGEVIRQWALAGMGIAL 239 Query: 241 KSRLDVLADLRNGRLEALLPDYV 263 KS LDV DL RL +L Y+ Sbjct: 240 KSILDVQDDLNQQRLVTVLDGYM 262 >RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 158/293 (53%), Gaps = 5/293 (1%) Query: 6 DLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDGERY 65 +L FV A GSLSAAAR +T S + ++E +G L+ R+TR + LTP+GE + Sbjct: 10 ELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEGEVF 69 Query: 66 LQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPAVNLQV 125 L++AR +L E++ + + G L ++ FGR + + E+ Q+P V++Q+ Sbjct: 70 LEHARRILGEIDDLDQLLTQAKGRPRGLLRVNATLGFGRRHIAPAISEYVRQYPGVDVQL 129 Query: 126 RISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPRSPADL 185 +++ + +V IR+ P D+ ++A +AP NRR+LCA+PDYL RHG P +PADL Sbjct: 130 QLTADPPPLNEDAFDVCIRFGEPPDARIIARKVAP-NRRLLCAAPDYLRRHGTPLAPADL 188 Query: 186 RQHNCLRYLLSDTLHSQWTFFK-DGTPLQMQ---VSGDRVCDDGELVHRWAVDGRGIAYK 241 +HNC+ + W GT + + V G+ +DGE+ WA++G GI + Sbjct: 189 ARHNCIGIRQGSDAYGVWRLTSGKGTKRRTETVHVRGNLTTNDGEIAVNWALEGHGIVMR 248 Query: 242 SRLDVLADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELLGERI 294 ++ DV LR G+L +LP Y + + V R LSP +R E L R Sbjct: 249 AQWDVERYLRGGQLVQVLPLYATPEADIYAVYLQRHQLSPRIRLFVEFLAGRF 301