BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3660.p         (131 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all5069 [TK] COG2197 Response regulator containing a CheY-like r...    73   2e-13
PA3974_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa                    72   3e-13
sll1229_1 [T] COG0784 FOG Syn Synechocystis                            70   9e-13
all0824_3 [T] COG0784 FOG Nos Nostoc sp. PCC 7120                      70   1e-12
mlr6691 [T] COG0784 FOG Mlo Mesorhizobium loti                         70   2e-12

>all5069 [TK] COG2197 Response regulator containing a CheY-like receiver
           domain and an HTH DNA-binding domain Nos Nostoc sp. PCC
           7120
          Length = 245

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)

Query: 12  LPL-LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMN 70
           +PL +L+VDD++    + +  LEL GY V++A  G +ALT  +   PDL+++D +MP MN
Sbjct: 19  MPLTILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEAYHPDLIVTDIVMPRMN 78

Query: 71  GLELCAALRALPGGPALPIILCSG---APERHDLSQSSHNLFLRKPVFFERLLQEIQRLL 127
           G EL   +R  P    LP+IL +      ER    QS  +L+L KP   E L   I+ LL
Sbjct: 79  GYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 138


>PA3974_3 [T] COG0784 FOG Pae Pseudomonas aeruginosa
          Length = 127

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 4/109 (3%)

Query: 14  LLLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLE 73
           +L++ D+ I+   T  MLL+L GYRV +A +G++AL    ++ PD V+ DC MPVM+G  
Sbjct: 2   VLVVEDNAINQLVTRGMLLKL-GYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFA 60

Query: 74  LCAALRALPGGPALPIILC---SGAPERHDLSQSSHNLFLRKPVFFERL 119
            C A+RALPG   LP++     S + +R     +  + ++ KPV FE L
Sbjct: 61  TCRAIRALPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEEL 109


>sll1229_1 [T] COG0784 FOG Syn Synechocystis
          Length = 128

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLEL 74
           L IVDD  D     A LL  HGYR+  A++   AL   +Q  PDL++ D  MP MNG E+
Sbjct: 8   LFIVDDTPDNVRLLANLLSAHGYRIRKALNANFALKSIEQSPPDLILLDVNMPTMNGYEM 67

Query: 75  CAALRALPGGPALPIILCSGAPERHDLSQSSHNL----FLRKPVFFERLLQEIQRLL 127
           CA L++ P    +PII  S      D    + NL    ++ KP   E +L  I+  L
Sbjct: 68  CARLKSNPHTQEIPIIFISALDNVLD-KVKAFNLGGADYITKPFQMEEVLARIEHQL 123


>all0824_3 [T] COG0784 FOG Nos Nostoc sp. PCC 7120
          Length = 202

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 60/113 (53%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLEL 74
           +L+VDD+ +I +     LE  GY V  A  G DA+ + +   PDL++ D MMP +NG ++
Sbjct: 3   ILVVDDDANIRELLRQQLENEGYNVREAKDGMDAIHQIKISSPDLIVLDVMMPQINGFDV 62

Query: 75  CAALRALPGGPALPIILCSGAPERHDLSQSSHNLFLRKPVFFERLLQEIQRLL 127
            A L+  P    +PII+ S    +        + +L KP+  E LL EI  LL
Sbjct: 63  AAVLKNDPLTADIPIIILSIVENKERGHHIGIDRYLTKPINTEELLNEIGSLL 115



 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMM 66
           +L+VD       T + +L+  GY V+ A    + + KA    PD++I D + 
Sbjct: 124 VLVVDQNASTLKTISDVLQTQGYNVIEASDRQECIHKALSAKPDMIIIDSIF 175


>mlr6691 [T] COG0784 FOG Mlo Mesorhizobium loti
          Length = 130

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 3/120 (2%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLEL 74
           +LI DD+  + +     L   GY V++A+ GA+AL KA+Q  PD+++ D MMP  +GLE+
Sbjct: 8   VLICDDDPLLLELMEFRLRAKGYEVITAVDGAEALAKAEQHGPDIIVLDAMMPKADGLEV 67

Query: 75  CAALRALPGGPALPIILCSGAPERHDLS---QSSHNLFLRKPVFFERLLQEIQRLLPTRS 131
            A L+  P     P+++ +      D+    +   + +L KP   E LL  + RL+  ++
Sbjct: 68  LARLKGDPVLSDTPVVMLTARKAERDIVSALEKGADDYLVKPFIPEELLARLARLIARKN 127