BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3640.p (579 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 371 e-102 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 346 8e-95 RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 345 2e-94 YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 342 2e-93 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 341 3e-93 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/521 (45%), Positives = 336/521 (64%), Gaps = 19/521 (3%) Query: 6 DLKIAHKLNAAFLVVLLFLVGLGGMSILQLAQVNQSATDIA--RNWLPSINSLSKISLAL 63 D++I +L AAF +V+ L+G+ + I +L N I R L ++++ K + Sbjct: 5 DMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKNNGYK 64 Query: 64 ARSRSFDMQQLLTDDKKEEQASRERASKQMEILLKEMSIYG---SLVSEPREKELFLEIQ 120 A ++ + T ++K + S A +Q YG L++ + K LF E Sbjct: 65 ANGILSNLLLVTTPEQKTKYMSDYAAIRQ-----ANAQAYGRLEKLLTTDQGKALFKEQF 119 Query: 121 HNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVV---YRKLQDQINEATEINRKGAMD 177 + Y ++ + L QEA A+ + + Y L D++ + ++ G M+ Sbjct: 120 DARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVD----HQAGEME 175 Query: 178 SD-DQANQVYQQARLAIVGLIASCMALALLMSWWIARLVARPLTHAVDIARQVAAGDLRA 236 D +A A++ ++ L LA+ +I R + RP+ HA+ +A VA G+L Sbjct: 176 HDVSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNL-T 234 Query: 237 HIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTASTEIATGNMNLSSRTEQQ 296 H+ ++DE G+LL AL+ M +NL IV +VR GTDTI+ AS+E+A+GN++LSSRTEQQ Sbjct: 235 HLLEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQ 294 Query: 297 AGALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQVVGKVVHTMGAINDSS 356 A +LEETA+AME+LTSTV+QN+DNA++A++LA +AS VA GG V + + TM IN SS Sbjct: 295 ASSLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSS 354 Query: 357 RRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIK 416 R+IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AA+EIK Sbjct: 355 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIK 414 Query: 417 TLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAASAEQTQGIEQINNAVA 476 LI+DSV V G+ V+EAGQ + +VVA ++ V++IV+EI+A+S EQ+ GIEQIN A+ Sbjct: 415 ALIEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAIT 474 Query: 477 QMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDA 517 QMD+ TQ+NA+LVE++A AA+ALQ+QA +L+ VS F L A Sbjct: 475 QMDKATQENASLVEESATAAQALQDQANQLADMVSTFKLHA 515 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 346 bits (888), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 229/475 (48%), Positives = 302/475 (63%), Gaps = 23/475 (4%) Query: 103 YGSLVSEPREKELFLEIQ--HNVADYKSAHERMEQLFAQGKKQEAHAVLSTSSTVVYRKL 160 Y +L S P E++L E V A M+ + A ++ + V+ + +YR L Sbjct: 101 YRALPSTPDERKLADEADALRTVFLRDGAQALMQAIQAGDAERTSQTVME-AMPALYRPL 159 Query: 161 QDQINEAT----EINRK----GAMDSDDQANQVYQQARLAIVGLIASCMALALLMSWWIA 212 D++ + EI R G + D + + IVG L++W + Sbjct: 160 GDKVTALSRMQMEIARASYEAGQREHDGLSALTAALLLVGIVG--------GGLLTWSLR 211 Query: 213 RLVARPLTHAVDIARQVAAGDLRAHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGT 272 R + PL A++ A + GDL I + + DETG++L AL+RM ++L+ +V +VR G+ Sbjct: 212 RSITVPLNRAIEQAEHITRGDLTHAIHVDRA-DETGRMLLALQRMQESLQGMVGQVRTGS 270 Query: 273 DTISTASTEIATGNMNLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVSAS 332 D I++A+ +IA GN +LS RTEQQA +LEETAS+ME+LT V+QN+D+ARQA+ LAV+AS Sbjct: 271 DAIASATQQIAAGNADLSQRTEQQASSLEETASSMEQLTGMVKQNADSARQASTLAVNAS 330 Query: 333 EVAQAGGQVVGKVVHTMGAINDSSRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGR 392 ++A GG+VVG+VV TM I+DSSR+I DII VI+GIAFQTNILALNAAVEAARAGEQGR Sbjct: 331 DIAVKGGEVVGRVVETMAGIHDSSRKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGR 390 Query: 393 GFAVVASEVRSLAQRSASAAREIKTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSD 452 GFAVVA EVRSLAQRSA AA+EIKTLI DSV +VE+G+ LV EAG ++EVV +VKRV+ Sbjct: 391 GFAVVAGEVRSLAQRSAGAAKEIKTLISDSVGRVESGTTLVAEAGTVIDEVVVAVKRVTG 450 Query: 453 IVAEITAASAEQTQGIEQINNAVAQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSV 512 I+ EI+AAS Q++GI Q+N AV QMDE TQQNAALVEQAAAAA +LQEQA L TV+ Sbjct: 451 IMGEISAASDAQSEGIAQVNQAVTQMDEATQQNAALVEQAAAAAMSLQEQADGLRGTVAA 510 Query: 513 FHLDA---SQAPLVSNTANTAAAHNKAARNVLPRHPAVAATRTKIIARPAQAAPS 564 F A +Q A A L R PA A + A +A PS Sbjct: 511 FRTRADAPAQTVARPARPAAAPVKAPARATALARRPAPKAAVARPPATAGEATPS 565 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 345 bits (885), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 210/328 (64%), Positives = 253/328 (77%), Gaps = 9/328 (2%) Query: 221 HAVDIARQVAAGDLRAHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGTDTISTAST 280 +A ++A ++A GDL IA T D+ LL A+ RM L + +R ++TI TA+ Sbjct: 228 YAAEVANRIAGGDLSVEIA--TRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATR 285 Query: 281 EIATGNMNLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVSASEVAQAGGQ 340 EIA+GN++LSSRTEQQA +LEETASAMEEL STV+QN+DNA QANQLAVSAS+VA GG Sbjct: 286 EIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGD 345 Query: 341 VVGKVVHTMGAINDSSRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 400 VV +VV TMG+IN SSR+IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA E Sbjct: 346 VVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGE 405 Query: 401 VRSLAQRSASAAREIKTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSDIVAEITAA 460 VRSLAQRSA+AA+EIK LIDDSVT V+AGS LV+EAG TM E+VASV+RV+DIV EITAA Sbjct: 406 VRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAA 465 Query: 461 SAEQTQGIEQINNAVAQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSVFHLDASQA 520 S EQ GIE++++AV Q+D+ TQQNAALVEQAAAAA++LQEQA L+Q V+ F LD + + Sbjct: 466 SQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMS 525 Query: 521 PLVSNTANTAAAHNKAARNVLPRHPAVA 548 + S A KA + P P A Sbjct: 526 AVRSVVA-------KAEPTIAPPVPKAA 546 >YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 649 Score = 342 bits (876), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 185/309 (59%), Positives = 237/309 (76%), Gaps = 5/309 (1%) Query: 209 WWIARLVARPLTHAVDIARQVAAGDLRAHIAANTSK--DETGQLLDALRRMNDNLRDIVQ 266 W + R + PL +D+A ++A GDL AA TS DE G L++A+ RMN+NLR ++ Sbjct: 306 WRMTRQITVPLRATLDMAERIATGDL---TAATTSSRTDELGMLMNAVARMNENLRAMID 362 Query: 267 EVRIGTDTISTASTEIATGNMNLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQANQ 326 E+RIG +S AS EIA GN +LSSRTEQQA A+EETA++ME+L +TV+QN+DNA ANQ Sbjct: 363 EIRIGVSQVSHASGEIAAGNTDLSSRTEQQAAAVEETAASMEQLNATVKQNTDNAHHANQ 422 Query: 327 LAVSASEVAQAGGQVVGKVVHTMGAINDSSRRIVDIIAVIDGIAFQTNILALNAAVEAAR 386 LA AS+ AQ GG++V VV TM I+ SS+RI +I +VI+ IAFQTNILALNAAVEAAR Sbjct: 423 LATEASQTAQQGGKLVNDVVRTMNDISGSSKRISEITSVINSIAFQTNILALNAAVEAAR 482 Query: 387 AGEQGRGFAVVASEVRSLAQRSASAAREIKTLIDDSVTKVEAGSKLVDEAGQTMNEVVAS 446 AGEQGRGFAVVASEVR+LAQRSA AA+EI+ LI +SV++V AG+ LV AG TM E+V S Sbjct: 483 AGEQGRGFAVVASEVRNLAQRSAQAAKEIEGLIGESVSQVNAGTSLVKNAGNTMEEIVRS 542 Query: 447 VKRVSDIVAEITAASAEQTQGIEQINNAVAQMDENTQQNAALVEQAAAAAKALQEQAARL 506 V V DI+AEI +AS EQ++GI Q++ A+++MD TQQNAALVE++AAAA +L EQA L Sbjct: 543 VSHVRDIMAEIASASDEQSRGITQVSLAISEMDSTTQQNAALVEESAAAADSLAEQAILL 602 Query: 507 SQTVSVFHL 515 +Q V+VF L Sbjct: 603 AQAVAVFRL 611 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 341 bits (874), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 181/303 (59%), Positives = 238/303 (78%), Gaps = 1/303 (0%) Query: 213 RLVARPLTHAVDIARQVAAGDLRAHIAANTSKDETGQLLDALRRMNDNLRDIVQEVRIGT 272 +++ PL H + + +A GDL +I + ++E G L +L+ M L IV EVR+G Sbjct: 216 QILIHPLNHLIAHIKHIANGDLTQNIEVH-GRNEVGTLAASLKHMQSELVTIVGEVRVGA 274 Query: 273 DTISTASTEIATGNMNLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVSAS 332 D I + ++EIA GN +LS+RTEQQA +LEETA++ME+LT+TV+QN++NARQA+QLA+SAS Sbjct: 275 DAIYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSAS 334 Query: 333 EVAQAGGQVVGKVVHTMGAINDSSRRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGR 392 E AQ GG+VV VV TM I SS++I DI +VIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 335 ETAQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGR 394 Query: 393 GFAVVASEVRSLAQRSASAAREIKTLIDDSVTKVEAGSKLVDEAGQTMNEVVASVKRVSD 452 GFAVVA EVR+LAQRSA AA+EIK LIDDSV +V+ GS LV+ AG+TM ++V +V RV+D Sbjct: 395 GFAVVAGEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTD 454 Query: 453 IVAEITAASAEQTQGIEQINNAVAQMDENTQQNAALVEQAAAAAKALQEQAARLSQTVSV 512 I+ EI +AS EQ++GI+QI AVA+MD TQQNA+LVE++A+AA +L+EQA+ L+Q +SV Sbjct: 455 IMGEIASASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSV 514 Query: 513 FHL 515 F L Sbjct: 515 FVL 517