BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3638.p         (133 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA2013_3 [T] COG0784 FOG Mac Methanosarcina acetivorans str.C2A        38   0.005
PA3345 [T] COG2198 FOG Pae Pseudomonas aeruginosa                      35   0.034
VC1349_5 [T] COG2198 FOG Vch Vibrio cholerae                           35   0.051
PA4112_5 [T] COG2198 FOG Pae Pseudomonas aeruginosa                    30   1.4  
AF1040 [NT] COG0643 Chemotaxis protein histidine kinase and rela...    30   1.8  

>MA2013_3 [T] COG0784 FOG Mac Methanosarcina acetivorans str.C2A
          Length = 280

 Score = 38.1 bits (87), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 1/102 (0%)

Query: 26  HLLDAVGGDVNTVASLARTFLAGAPAIFLRLEQAILAGNAAASRHESHTLKGMCALFQAK 85
            +L+   GD   +  + + FL  AP +   +  A+  G A A R  +H LK       A 
Sbjct: 173 EVLERTEGDEVLLKEMVKIFLGMAPELLDSINSALRKGEAEALRENAHILKSAAGSIGAN 232

Query: 86  ALTELLHQTEQAG-RDGCTPEPEQLQQLQTSFALVQEEIERY 126
            +  + +  EQ G RD      ++ ++++  F  ++  + RY
Sbjct: 233 RVFRVAYYLEQVGRRDRMELASDKFEEIKARFKELEPVLVRY 274


>PA3345 [T] COG2198 FOG Pae Pseudomonas aeruginosa
          Length = 116

 Score = 35.4 bits (80), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 26  HLLDAVGGDVNTVAS-----LARTFLAGAPAIFLRLEQAILAGNAAASRHESHTLKGMCA 80
           HL D V   +  V       L  TF+  +      L  A+ AG+A A RH +H+ KG  +
Sbjct: 5   HLDDRVLASLQEVMEDEYPVLLDTFVLDSEERLRSLHAALQAGDAQALRHTAHSFKGGSS 64

Query: 81  LFQAKALTELLHQTEQAGRDG-CTPEPEQLQQLQTSFALV----QEEIERY 126
              A  L     + E++ R G     P  ++Q++  FA+V    ++E +RY
Sbjct: 65  NMGAVLLAGYCKELEESARRGELQRAPALIEQMEREFAIVRILFKQERQRY 115


>VC1349_5 [T] COG2198 FOG Vch Vibrio cholerae
          Length = 231

 Score = 34.7 bits (78), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 51/121 (42%)

Query: 6   STPAANDTSNTGDYHHIDPSHLLDAVGGDVNTVASLARTFLAGAPAIFLRLEQAILAGNA 65
           S PA N   +      +D    +  +GG+      + R F+         +   I A + 
Sbjct: 28  SKPAMNALLDLPQLTGVDLEQAIFRIGGNQQRYFEILRHFIDSQVDELNSVTGLIEAQDW 87

Query: 66  AASRHESHTLKGMCALFQAKALTELLHQTEQAGRDGCTPEPEQLQQLQTSFALVQEEIER 125
           +++   +HTLKG  A    +AL +L  + EQ+      P  E LQQ Q+    V +E+  
Sbjct: 88  SSATRVAHTLKGSAANLGLEALAQLAAEMEQSLEQQVLPSFELLQQAQSLLTQVDDELSA 147

Query: 126 Y 126
           +
Sbjct: 148 W 148


>PA4112_5 [T] COG2198 FOG Pae Pseudomonas aeruginosa
          Length = 158

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 32/68 (47%)

Query: 32  GGDVNTVASLARTFLAGAPAIFLRLEQAILAGNAAASRHESHTLKGMCALFQAKALTELL 91
           GG +  +  + R F+     +F +LE+ +  G+   S    HT+KG  +   A AL    
Sbjct: 48  GGSLELIVQVLRRFVPDMQDLFAQLERQLGEGDVQGSAATLHTIKGSASTVGASALAGRA 107

Query: 92  HQTEQAGR 99
            + EQA R
Sbjct: 108 SELEQALR 115


>AF1040 [NT] COG0643 Chemotaxis protein histidine kinase and related
           kinases Afu Archaeoglobus fulgidus
          Length = 656

 Score = 29.6 bits (65), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 72  SHTLKGMCALFQAKALTELLHQTEQAG---RDGCTPEPEQL 109
           +HT+KGM      K L EL H+ E A    RDG     E+L
Sbjct: 45  AHTIKGMAGFMGYKNLEELCHKLESAMGKVRDGEIEVTEEL 85