BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3635.p (514 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value VCA0809 [R] COG3046 Uncharacterized protein related to deoxyribo... 472 e-133 AGl236 [R] COG3046 Uncharacterized protein related to deoxyribod... 416 e-115 CC0646 Non COG 412 e-114 slr1343 [R] COG3046 Uncharacterized protein related to deoxyribo... 331 2e-90 VNG0705C [R] COG3046 Uncharacterized protein related to deoxyrib... 280 8e-75 >VCA0809 [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase Vch Vibrio cholerae Length = 516 Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust. Identities = 255/519 (49%), Positives = 333/519 (64%), Gaps = 17/519 (3%) Query: 7 TTLRLILGDQLNPQHSWFERVDTDVVYVLMEVRCETDYVLHHAQKILAIFAAMRAFGEHL 66 + +RLILGDQLN HSWF DV+Y++ E+ E +YV HH QK A FAAM+AF ++L Sbjct: 4 SVVRLILGDQLNHAHSWFSEHRDDVLYLIAELHQEQEYVRHHIQKQCAFFAAMQAFADYL 63 Query: 67 RAAGHRVSYIRLDDPSNRQRLEDNLSALASHYQARCVQWQAPDEWRLDQALQQWGDQQ-- 124 A GH V ++ LD + L D ++ + QA Q+Q PDE+RL L+Q + + Sbjct: 64 SAEGHHVWHLDLDASAQYNDLPDLIAQICQQVQADAFQYQRPDEYRL---LEQMANLRLS 120 Query: 125 DLQTVVVDSEHFLTIRDELPRLFAGRKQWLMEQFYRQIRRRFALLLDAQGQPEGGQWNFD 184 + VD+EHFL E+P F K LME FYR++R+RF L+ A G+PEGGQWNFD Sbjct: 121 GITIGCVDTEHFLLPFAEIPEQFPASKAVLMEHFYRRMRKRFGYLMTADGKPEGGQWNFD 180 Query: 185 HDNRKRWPGTP----PQPQDWRTPHDHGALWAMLQTQGVASFGDPLATQLRWPLTRAEAL 240 DNR + P P + P ++ A ++ + S G + L WP+ RA+AL Sbjct: 181 ADNRNKLKSPDLLQLPTPLCFDNPV--ASIKARIERHRIPSIGQ-VGESLLWPINRAQAL 237 Query: 241 HHLEHFIQAVLPYFGDYEEAMSSQAQ---RLFHSLLSFALNVKMLHPLEVVRRAEAAYRA 297 L HF Q LP FG +++AM++Q L+HS LSFALN K+L P EV+ +AYRA Sbjct: 238 SLLAHFCQICLPNFGRFQDAMTAQHPHRWSLYHSRLSFALNSKLLSPREVIEATISAYRA 297 Query: 298 --GHAPLAAVEGFIRQIIGWREYVRGIYWSQMPGYEQRNALDHRLPLPAWFWTGQTGMNC 355 G LA VEGF+RQI+GWREYVRG+YWS MP Y+ RN L + PLP++FW GQT M C Sbjct: 298 AQGQISLAQVEGFVRQILGWREYVRGMYWSNMPHYQTRNHLGAQRPLPSYFWNGQTKMRC 357 Query: 356 LRHAIGQSLQTAHAHHIQRLMVIGNFALLARLDPKALHQWYLGIYIDAFEWVELPNTLGM 415 L+ AI QSL +AHHIQRLMV GNFALL DP + WYLGIYIDA EWVELPNT GM Sbjct: 358 LQQAITQSLDFGYAHHIQRLMVTGNFALLTECDPDQVDAWYLGIYIDAIEWVELPNTRGM 417 Query: 416 SQWADGGLIATKPYVSSAAYIGRMSDYCRGCAYDPKQKTSEQACPFNALYWDFFLRHQAR 475 + +ADGGLIATKPY +S +YI +MSDYC CAY K K+ E+ACP N+LYW F L+H+ R Sbjct: 418 ALFADGGLIATKPYSASGSYINKMSDYCASCAYQVKLKSGEKACPLNSLYWRFMLKHRDR 477 Query: 476 FGHNPRLGMVYQQIRKMAPADLEALQARAQTLRSQLDTL 514 +NPR+GM+Y+ KM +A+ + A SQ+++L Sbjct: 478 LANNPRIGMLYKTWDKMTSDSQQAILSTADAYLSQIESL 516 >AGl236 [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 507 Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust. Identities = 225/515 (43%), Positives = 296/515 (57%), Gaps = 18/515 (3%) Query: 7 TTLRLILGDQLNPQHSWFERVDT--DVVYVLMEVRCETDYVLHHAQKILAIFAAMRAFGE 64 + L LILGDQL+P + + VD D + VL EV E YV HH +KI IF+AMR F E Sbjct: 2 SQLVLILGDQLSPSIAALDGVDKKQDTI-VLCEVMAEASYVGHHKKKIAFIFSAMRHFAE 60 Query: 65 HLRAAGHRVSYIRLDDPSNRQRLEDNLSALASHYQARCVQWQAPDEWRLDQALQQWGDQQ 124 LR G+RV Y R+DD N + + P EWR+ + + Sbjct: 61 ELRGEGYRVRYTRIDDADNAGSFTGEVKRAIDDLTPSRICVTEPGEWRVRSEMDGFAGAF 120 Query: 125 DLQTVVVDSEHFLTIRDELPRLFAGRKQWLMEQFYRQIRRRFALLLDAQGQPEGGQWNFD 184 +Q + FL+ E AGRK ME FYR++RR+ LL++ + QP GG+WNFD Sbjct: 121 GIQVDIRSDRRFLSSHGEFRNWAAGRKSLTMEYFYREMRRKTGLLMNGE-QPVGGRWNFD 179 Query: 185 HDNRKRWPGTPPQPQDWRTPHDHGALWAMLQTQGVAS-----FGDPLAT--QLRWPLTRA 237 +NR+ P +P R H A + T+ V F D + +TR Sbjct: 180 AENRQ-----PARPDLLRPKHPVFAPDKI--TKEVIDTVERLFPDNFGKLENFGFAVTRT 232 Query: 238 EALHHLEHFIQAVLPYFGDYEEAMSSQAQRLFHSLLSFALNVKMLHPLEVVRRAEAAYRA 297 +A L FI L FG ++AM L HSLLSF +N +L L+V + AE AY Sbjct: 233 DAERALSAFIDDFLCNFGATQDAMLQDDPNLNHSLLSFYINCGLLDALDVCKAAERAYHE 292 Query: 298 GHAPLAAVEGFIRQIIGWREYVRGIYWSQMPGYEQRNALDHRLPLPAWFWTGQTGMNCLR 357 G APL AVEGFIRQIIGWREY+RGIYW P Y N ++ LP ++WTG+T MNC+ Sbjct: 293 GGAPLNAVEGFIRQIIGWREYMRGIYWLAGPDYVDSNFFENDRSLPVFYWTGKTHMNCMA 352 Query: 358 HAIGQSLQTAHAHHIQRLMVIGNFALLARLDPKALHQWYLGIYIDAFEWVELPNTLGMSQ 417 I ++++ A+AHHIQRLM+ GNFALLA +DPKA+H+WYL +Y DA+EWVELPN +GMSQ Sbjct: 353 KVITETIENAYAHHIQRLMITGNFALLAGIDPKAVHRWYLEVYADAYEWVELPNVIGMSQ 412 Query: 418 WADGGLIATKPYVSSAAYIGRMSDYCRGCAYDPKQKTSEQACPFNALYWDFFLRHQARFG 477 +ADGG + TKPY +S YI RMSDYC C YDPK++ + ACPFNALYWDF R++ + Sbjct: 413 FADGGFLGTKPYAASGNYINRMSDYCDTCRYDPKERLGDNACPFNALYWDFLARNREKLK 472 Query: 478 HNPRLGMVYQQIRKMAPADLEALQARAQTLRSQLD 512 N RL Y +M+ L+A+A +LD Sbjct: 473 SNHRLAQPYATWARMSEDVRHDLRAKAAAFLRKLD 507 >CC0646 Non COG Length = 509 Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust. Identities = 230/510 (45%), Positives = 315/510 (61%), Gaps = 10/510 (1%) Query: 6 ATTLRLILGDQLNPQHSWFERVDTDVVYVLM-EVRCETDYVLHHAQKILAIFAAMRAFGE 64 A LRL+LGDQL+ S D VLM E R E HH QK++ +++AMR F E Sbjct: 2 AGALRLVLGDQLSDNLSALVDADLSRDQVLMVESRVEATAWKHHKQKLVLVWSAMRQFAE 61 Query: 65 HLRAAGHRVSYIRLDDPSNRQRLEDNLS-ALASHYQARCVQWQAPDEWRLDQALQQWGDQ 123 LRA G V Y+ L+DP N + L AL + R ++ A +W L+ L Sbjct: 62 RLRARGFNVRYVTLEDPDNTGSIGGELRRALEARAFDRVIR-TACGKWGLESHLLSLDLP 120 Query: 124 QDLQTVVVDSEHFLTIRDELPRLFAGRKQWLMEQFYRQIRRRFALLLDAQGQPEGGQWNF 183 ++T + + FL R + GR++ ME FYR++RR+ LL+D QP GG+WNF Sbjct: 121 VPMETR--EDDRFLCSRAQFAAWAEGRRELRMEFFYREMRRKTGLLMDGD-QPAGGRWNF 177 Query: 184 DHDNRKRWPGTPPQPQDWRTPHDHGALWAMLQ-TQGVAS-FGDPLATQLRWPLTRAEALH 241 D +NR++ P P+ R P + + Q ++G FG+ WP EA Sbjct: 178 DAENRRKLPPGLRPPERLRIPPNPTTQTVLEQVSRGFDDHFGE--VEGFGWPTNPDEATA 235 Query: 242 HLEHFIQAVLPYFGDYEEAMSSQAQRLFHSLLSFALNVKMLHPLEVVRRAEAAYRAGHAP 301 L+HFI +LP FGD+++AMS + L+HSL+S ALN+ +L PL++ RRAEAA+R G AP Sbjct: 236 ILDHFIADMLPSFGDWQDAMSWRRPFLWHSLISPALNIGLLDPLDICRRAEAAWREGRAP 295 Query: 302 LAAVEGFIRQIIGWREYVRGIYWSQMPGYEQRNALDHRLPLPAWFWTGQTGMNCLRHAIG 361 L AVEGFIRQIIGWRE+VRGIYW +MP Y QRNALD + LP ++WTGQT M C+ + Sbjct: 296 LNAVEGFIRQIIGWREFVRGIYWLKMPEYAQRNALDAQGKLPGFYWTGQTDMACVADTVR 355 Query: 362 QSLQTAHAHHIQRLMVIGNFALLARLDPKALHQWYLGIYIDAFEWVELPNTLGMSQWADG 421 + A+AHHIQRLMV GN A+L + P A+ WY+ ++ DA+EWVE+PNT GM+ +ADG Sbjct: 356 AAHDHAYAHHIQRLMVTGNLAMLLGVHPDAVDDWYMVVFADAYEWVEMPNTRGMATFADG 415 Query: 422 GLIATKPYVSSAAYIGRMSDYCRGCAYDPKQKTSEQACPFNALYWDFFLRHQARFGHNPR 481 G++ +KPY +S AYI RMSDYC+GC YD K++ + ACPFNALYWDF RH R N R Sbjct: 416 GIVGSKPYAASGAYIDRMSDYCKGCRYDVKKRLGDDACPFNALYWDFIDRHAQRLAGNGR 475 Query: 482 LGMVYQQIRKMAPADLEALQARAQTLRSQL 511 + M + + KM A+ EA + +A+ LR ++ Sbjct: 476 MMMPLRTLEKMPDAEREAFRKQARALRVKM 505 >slr1343 [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase Syn Synechocystis Length = 504 Score = 331 bits (849), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 191/508 (37%), Positives = 288/508 (56%), Gaps = 27/508 (5%) Query: 12 ILGDQLNPQHSWFERVDTD---VVYVLMEVRCETDYVLHHAQKILAIFAAMRAFGEHLRA 68 ILGDQL + + D V +L+E +H QK++ +++AMR F E LRA Sbjct: 7 ILGDQLWSGQTALKSHQGDRSQVPVLLIESAEFARQRPYHRQKLVLVWSAMRHFAEDLRA 66 Query: 69 AGHRVSYIRLDDPSNRQRLEDNLSALASHYQARCV---QWQAPDEWRLDQALQQWGDQQD 125 G V+Y + D L+ L + + V Q AP D+ + W Sbjct: 67 EGWSVTY---------EIAADFLTPLHHWLKTQGVSHLQVMAPG----DRPFEAWLKSLT 113 Query: 126 L--QTVVVDSEHFLTIRDELPRLFAGRKQWLMEQFYRQIRRRFALLLDAQGQPEGGQWNF 183 L + ++ + HFL R++ RK+ L+E FYR R+R+ +L+ QP GG+WNF Sbjct: 114 LPCELTLLPNNHFLWSREDFSAWAGDRKRLLLEDFYRAGRKRWQILM-VDDQPVGGRWNF 172 Query: 184 DHDNRK--RWPGTPPQPQDWRTPHDHGALWAMLQTQGVASFGDPLATQLRWPLTRAEALH 241 D DNRK + +PP+P + P D + + + + G + +W ++R +AL Sbjct: 173 DQDNRKPAKKNLSPPKPLSF--PPDDITQQVIERIEQLNLPGYGQLSGFQWGVSRQDALQ 230 Query: 242 HLEHFIQAVLPYFGDYEEAMSSQAQRLFHSLLSFALNVKMLHPLEVVRRAEAAYRAGHAP 301 L++F+ L FG Y++AM + L+HSL+S LN+ +L PLEV+ A A+ Sbjct: 231 GLKYFVDVGLSQFGTYQDAMVMGQKTLWHSLISPYLNLGLLTPLEVIEAATNAFATQDIS 290 Query: 302 LAAVEGFIRQIIGWREYVRGIYWSQMPGYEQRNALDHRLPLPAWFW-TGQTGMNCLRHAI 360 L VEGFIRQ++GWREY++GIY Y Q N +H PLP ++W + T MNCL + Sbjct: 291 LNNVEGFIRQVLGWREYMQGIYQWVDEDYGQGNWFNHDFPLPEFYWQSSHTKMNCLATVL 350 Query: 361 GQSLQTAHAHHIQRLMVIGNFALLARLDPKALHQWYLGIYIDAFEWVELPNTLGMSQWAD 420 Q +T +AHHIQRLMV+ NFAL+ ++P+ L W+ +IDA++WV N LGM Q+AD Sbjct: 351 NQVEETGYAHHIQRLMVLSNFALIVGVNPQKLQDWFHAAFIDAYDWVMQTNVLGMGQFAD 410 Query: 421 GGLIATKPYVSSAAYIGRMSDYCRGCAYDPKQKTSEQACPFNALYWDFFLRHQARFGHNP 480 GG++A+KPY SSA YI +MSDYC+ C+Y+ K +T + ACPFN YWDF RHQ + H Sbjct: 411 GGILASKPYASSANYINKMSDYCQQCSYNHKARTGKDACPFNYFYWDFLARHQEKLQHTG 470 Query: 481 RLGMVYQQIRKMAPADLEALQARAQTLR 508 R+G++ ++++ P ++ A+Q A+ R Sbjct: 471 RMGLILANLKRIEPTEMSAMQTLAENWR 498 >VNG0705C [R] COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase Hbs Halobacterium sp. NRC-1 Length = 503 Score = 280 bits (715), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 178/505 (35%), Positives = 253/505 (50%), Gaps = 17/505 (3%) Query: 12 ILGDQLNPQHSWFERVDTDVVYVLMEVRCETDYVLHHAQKILAIFAAMRAFGEHLRAAGH 71 +LG+QL D D V +L+E +H QK+ +FAAMR F + LR G Sbjct: 6 VLGNQLTRTAGPLTD-DPDRV-LLIEAAALARRRRYHPQKLCMVFAAMRHFRDELRDDGV 63 Query: 72 RVSYIRLDDPSNRQRLEDNLSALASHYQARCVQWQAPDEWRLDQALQQWGDQQDLQTVVV 131 V Y R + L A + + Q P L++ + VV Sbjct: 64 DVVYERA------ETFGAGLDAYFDAHPGDDLVVQRPANHGTADRLRELVAARGGSLRVV 117 Query: 132 DSEHFLTIRDELPRLFAGRKQWLMEQFYRQIRRRFALLLDAQGQPEGGQWNFDHDNRKRW 191 + F + + FYR +RR L+ PEGG W++D N++ Sbjct: 118 ANAQFRCSPAQFDDWMGTEPPFKHRPFYRHMRRETGYLMRDDDTPEGGDWSYDDQNQETP 177 Query: 192 PGTPPQPQDWRTPHDH--GALWAMLQTQGVASFGDPLATQLRWPLTRAEALHHLEHFIQA 249 P P +D A+ + T+ ++GDP WP+TR +A LE F+ Sbjct: 178 PAEYDSPSVGGFEYDEHVPAVRDWVATE-FDTWGDP--DGFDWPVTREQATRALESFVAD 234 Query: 250 VLPYFGDYEEAMSSQAQRLFHSLLSFALNVKMLHPLEVVRRAEAAYRA-GHAPLAAVEGF 308 L FG YE+A+ + L HSLLS A+N+ +LHP EV A AYR+ PL ++EGF Sbjct: 235 RLAGFGPYEDAVLADDWHLEHSLLSAAVNIGLLHPEEVADAALDAYRSRDDIPLNSIEGF 294 Query: 309 IRQIIGWREYVRGIYWSQMPGYEQRNALDHRLPLPAWFWT-GQTGMNCLRHAIGQSLQTA 367 +RQ+IGWRE++R +Y QMPG N L LP +WT T M CL A G+ Sbjct: 295 VRQLIGWREFMRHVYRHQMPGLATANQLGADRDLPPLYWTPTATDMACLGSAAGRVYDRG 354 Query: 368 HAHHIQRLMVIGNFALLARLDPKALHQWYLGIYIDAFEWVELPNTLGMSQWADGGLIATK 427 +AHHI+RLMV+ NFAL P+AL +W+ G ++DA++WV PN +GM + +K Sbjct: 355 YAHHIERLMVLSNFALTYGARPQALTEWFHGGFVDAYDWVVTPNVVGMGSFGTDAFT-SK 413 Query: 428 PYVSSAAYIGRMSDYCRGCAYDPKQKTSEQACPFNALYWDFFLRHQARFGHNPRLGMVYQ 487 PY SSA YI +M+D+C CA+DP E+ACPFN+LYWDF H+ N R+G+VY Sbjct: 414 PYASSANYIDKMTDHCSDCAFDPDSTVGERACPFNSLYWDFLATHEDTLRSNHRMGLVYS 473 Query: 488 QI-RKMAPADLEALQARAQTLRSQL 511 + K L A++ RAQ +R + Sbjct: 474 HLDSKRDAGKLAAIRERAQRVREGV 498