BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3627.p         (147 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0356 Non COG                                                        57   1e-08
NMA1924 Non COG                                                        53   3e-07
AGpTbx139 Non COG                                                      32   0.53 
HI1286 [V] COG0732 Restriction endonuclease S subunits Hin Haemo...    31   0.91 
AF0869 [S] COG0393 Uncharacterized conserved protein Afu Archaeo...    30   1.8  

>RSp0356 Non COG
          Length = 144

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 48/102 (47%)

Query: 44  LDGSVKFYFASQAHPAVLEKISTDVTNQKTNAVGKSDEEACKWVFLSALVQLHKKAKELG 103
           L   V  YF SQ HP V+E +   + +        ++ E C       L QL   A + G
Sbjct: 39  LSPGVALYFGSQQHPPVIETLGEVMKSAHLPRKTATEVEICNAALADTLRQLTSYAHDHG 98

Query: 104 GNAVVNIVSYYKKNEMASATEFECHAGATMAGVALKGDIVKL 145
            NAV+NI + +  N+  S + F C      + + ++GD+VK+
Sbjct: 99  ANAVINIKTSFHDNQSNSDSTFTCGVSGVASALRVRGDVVKI 140


>NMA1924 Non COG
          Length = 158

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 41  DGILDGSVKFYFASQAHPAVLEKISTDVTNQKTNAVGKSDEEACKWVFLSALVQLHKKAK 100
           DG+L+  +   F     P    +    VT Q  N +GK D EA +   ++A  +  + A 
Sbjct: 58  DGVLESGIPVSFGGGGVPVANGR--NLVTRQAANGIGKFDSEAYERALINAARKFQQTAG 115

Query: 101 ELGGNAVVNIVSYYKKNEMASATEFECHAGATMAGVALKGDIVK 144
           +LGG  V    SY+ K  +    +++C AG+    V ++ ++V+
Sbjct: 116 KLGGRGVTGFHSYFDKQPL-QGGQYDCQAGSFHVRVVMRANVVR 158


>AGpTbx139 Non COG
          Length = 102

 Score = 32.0 bits (71), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 57  HPAVLEKISTDVTNQKTNAVGKSDEEACKWVFLSALVQLHKKAKELGG 104
           HPA LEK++ D        V K+DE         AL + +K  KE+GG
Sbjct: 25  HPADLEKLTIDAIRAHRRLVEKADE------LFQALPESYKSGKEVGG 66


>HI1286 [V] COG0732 Restriction endonuclease S subunits Hin Haemophilus
           influenzae
          Length = 459

 Score = 30.8 bits (68), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 4/60 (6%)

Query: 69  TNQKTNAVGKSDEEACKWVFLS-ALVQLHKKAKEL--GGNAVVNI-VSYYKKNEMASATE 124
           TNQ+ N++   DE++C++++LS     + K  K+L  GG A +N+  S + K E+ + ++
Sbjct: 357 TNQQINSIIPDDEQSCEFLYLSLKQPSMTKYLKDLASGGTATLNLNTSTFSKIEIITPSK 416


>AF0869 [S] COG0393 Uncharacterized conserved protein Afu Archaeoglobus
           fulgidus
          Length = 108

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 64  ISTDVTNQKTNAVGKSDEEACKWVF---LSALVQLHKKAKELGGNAVVNIVSYYKKNEMA 120
           +  D+     N VG   EE  + +    + AL ++ K+AK+LG +AVVN V +     MA
Sbjct: 35  VGKDILAGLKNIVGGEIEEYTEMLRDARMEALNRMIKEAKKLGADAVVN-VRFTTSQTMA 93

Query: 121 SATEFECHAGA 131
            A E   +  A
Sbjct: 94  GAAELLAYGTA 104