BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3620.p         (207 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z4860 Non COG                                                          85   1e-16
ECs4335 Non COG                                                        85   1e-16
RSp0363 Non COG                                                        83   5e-16
RSc0430 Non COG                                                        44   3e-04
lin2258 [F] COG0208 Ribonucleotide reductase, beta subunit Lin L...    36   0.053

>Z4860 Non COG
          Length = 201

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 18/204 (8%)

Query: 4   SPYLSSLTLAATLLAALPAAHAGAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQANG 63
           SP++S+LTL                   +Q    +  V+   FDQT+ +  + +PL++ G
Sbjct: 12  SPFVSALTL-----------------DDLQQRFTEQPVIRAHFDQTRTIKDLPQPLRSQG 54

Query: 64  RFCVVKGRGILWQTLQPFPNTLRITREAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLL 123
           +  + + +G+LW    PFP  L +  + +VQ+ +G+    + A+  P +   N +L +L 
Sbjct: 55  QMLIARDQGLLWDQTSPFPMQLLLDDKRMVQVINGQPPQIITAENNPQMFQFNHLLRALF 114

Query: 124 AGDLSQLDNLFELDGTLR-DGHWQVALKARQPALAKAIGDISLAGAAYVDKVSMKEASGD 182
             D   L+  F ++   + +G W + L      L K    I LAG  Y++ + + +  GD
Sbjct: 115 QADRKVLEQNFRVEFADKGEGRWTLRLTPTTTPLDKIFNTIDLAGKTYLESIQLNDKQGD 174

Query: 183 RTDLSFSGIKTGEGAMTPEEGALF 206
           RTD++ +  +     +T +E   F
Sbjct: 175 RTDIALTQHQLTPAQLTDDERQRF 198


>ECs4335 Non COG
          Length = 201

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 18/204 (8%)

Query: 4   SPYLSSLTLAATLLAALPAAHAGAPVQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQANG 63
           SP++S+LTL                   +Q    +  V+   FDQT+ +  + +PL++ G
Sbjct: 12  SPFVSALTL-----------------DDLQQRFTEQPVIRAHFDQTRTIKDLPQPLRSQG 54

Query: 64  RFCVVKGRGILWQTLQPFPNTLRITREAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLL 123
           +  + + +G+LW    PFP  L +  + +VQ+ +G+    + A+  P +   N +L +L 
Sbjct: 55  QMLIARDQGLLWDQTSPFPMQLLLDDKRMVQVINGQPPQIITAENNPQMFQFNHLLRALF 114

Query: 124 AGDLSQLDNLFELDGTLR-DGHWQVALKARQPALAKAIGDISLAGAAYVDKVSMKEASGD 182
             D   L+  F ++   + +G W + L      L K    I LAG  Y++ + + +  GD
Sbjct: 115 QADRKVLEQNFRVEFADKGEGRWTLRLTPTTTPLDKIFNTIDLAGKTYLESIQLNDKQGD 174

Query: 183 RTDLSFSGIKTGEGAMTPEEGALF 206
           RTD++ +  +     +T +E   F
Sbjct: 175 RTDIALTQHQLTPAQLTDDERQRF 198


>RSp0363 Non COG
          Length = 210

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 89/178 (50%), Gaps = 1/178 (0%)

Query: 29  VQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQANGRFCVVKGRGILWQTLQPFPNTLRIT 88
           V Q+ A L +   +  RF QT+ L  +++PL + G     + RG++WQ  QP   T  +T
Sbjct: 31  VSQVAAQLGRARGVRARFTQTQTLLSMQRPLVSTGTLLFSRERGVIWQIEQPLRLTYVVT 90

Query: 89  REAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLAGDLSQLDNLFELDGTLRDGHWQVA 148
              +  +     A+    +    +  ++ ++ ++L GDLS + + F++       HW++ 
Sbjct: 91  EAGVRTLDAAGKAVPGSQRNAAGIAQVSRMMRAMLGGDLSAMYSQFDVAAQGTPAHWRLR 150

Query: 149 LKARQPALAKAIGDISLAGAAYVDKVSMKEASGDRTDLSFSGIKTGEGAMTPEEGALF 206
           L   QP LA+A+  + L G  YV  + ++  SGD T L F+   + +  ++P E AL 
Sbjct: 151 LTPTQPQLAQALRGLDLHGDTYVRGIIIRAVSGDETRLEFTDSASVD-TLSPAELALL 207


>RSc0430 Non COG
          Length = 211

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 2/157 (1%)

Query: 29  VQQIQATLAKPAVMCGRFDQTKQLTGIKKPLQANGRFCVVKGRGILWQTLQPFPNTLRIT 88
           + ++ +TLA+       F +TK L    +P++++G         +   TL P P  L + 
Sbjct: 46  LDRLMSTLARNKAGRATFVETKYLAIAAQPVESSGELVFAAPDHLEKHTLSPKPEHLVVD 105

Query: 89  REAIVQIQDGRVAMKLDAQQEPVVKMINSVLFSLLAGDLSQLDNLFELDGTLRDGHWQVA 148
            + +  I+  +    L   Q P +      + + LAG+   L+ ++ +  T R   W + 
Sbjct: 106 GDKLT-IERNQRKYTLPLAQYPELDAFIESIRATLAGNRYALEQVYRVAVTGRGDDWTLT 164

Query: 149 LKARQPALAKAIGDISLAGAA-YVDKVSMKEASGDRT 184
           L      + K +  I+L G    + +V++++A GDR+
Sbjct: 165 LTPLDARMLKVVSTITLDGTRDRLHRVAIQQADGDRS 201


>lin2258 [F] COG0208 Ribonucleotide reductase, beta subunit Lin Listeria
           innocua
          Length = 349

 Score = 36.2 bits (82), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 47  DQTKQLTGIK--KPLQANGRFCVVKGR--GIL-WQTLQPFPNTLRITREAIVQ--IQDGR 99
           +Q +QLT IK  +PL  N    ++ G   GIL W  + P+P+  R  +E      I D  
Sbjct: 3   NQKEQLTRIKILEPLFPNRSTSIINGETSGILNWNDI-PYPSFYRAYKELSTNYWIPD-E 60

Query: 100 VAMKLDAQQEPVVKMINSVLFSLLAGDLSQLD 131
           V MK DA+Q P +       F  + G L+ LD
Sbjct: 61  VDMKSDAKQYPALSEQEKYAFDAIIGLLATLD 92