BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3572.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0714 [H] COG0307 Riboflavin synthase alpha chain Rso Ralstoni... 283 2e-76 PA4055 [H] COG0307 Riboflavin synthase alpha chain Pae Pseudomon... 184 1e-46 VC2270 [H] COG0307 Riboflavin synthase alpha chain Vch Vibrio ch... 177 2e-44 DR0154 [H] COG0307 Riboflavin synthase alpha chain Dra Deinococc... 166 4e-41 XF0952 [H] COG0307 Riboflavin synthase alpha chain Xfa Xylella f... 159 5e-39 >RSc0714 [H] COG0307 Riboflavin synthase alpha chain Rso Ralstonia solanacearum Length = 217 Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 147/204 (72%), Positives = 159/204 (77%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLNIDAGTLPMADVSLGDSIALNGACMTVVEKTA 60 MFTGIVAAIG I +V PLAA AGVRL I AG LP+ADV+LGDSIA+ GACMTVV K Sbjct: 1 MFTGIVAAIGRIETVEPLAADAQAGVRLGIHAGGLPLADVALGDSIAIQGACMTVVAKND 60 Query: 61 QGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGLVHSFEPVGES 120 F VDVSRESL T GLD PGEVNLEKAL LA+ +GGHLVSGHVDGLG V F PVGES Sbjct: 61 THFDVDVSRESLSKTVGLDRPGEVNLEKALRLADHIGGHLVSGHVDGLGTVSHFAPVGES 120 Query: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKHLQ 180 EL V LG+Y AYKGS+VVNGVSLTVN V D A C FSINLIPHT+ VTTLKHL Sbjct: 121 YELRVRTSPELGRYFAYKGSVVVNGVSLTVNSVRDDATGCEFSINLIPHTLAVTTLKHLA 180 Query: 181 AGSKVNLEIDLIARYVERMLSSSA 204 G +VNLEIDLIARYVERML+ +A Sbjct: 181 VGGQVNLEIDLIARYVERMLTHTA 204 >PA4055 [H] COG0307 Riboflavin synthase alpha chain Pae Pseudomonas aeruginosa Length = 219 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 132/202 (65%), Gaps = 10/202 (4%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLNIDAGTLPMADVSLGDSIALNGACMTVVEKTA 60 MFTGI+ +IG++ ++TP G D +R+ I G L + DV LGDSIA+NG C+T VE Sbjct: 1 MFTGIIESIGSVRAMTP--KGGD--LRVYIATGKLDLGDVKLGDSIAVNGVCLTAVELPG 56 Query: 61 QGFTVDVSRESLRLTA--GLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGLVHSFEPVG 118 GF DVSRESL TA L VNLEKALT RLGGHLVSGHVDG+G V E Sbjct: 57 DGFWADVSRESLARTAFQHLKVGSRVNLEKALTPTTRLGGHLVSGHVDGVGEVLKREENA 116 Query: 119 ESRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKH 178 + + V AP+ L +Y+A+KGSI V+G SLTVN V + F + ++PHT+ T + Sbjct: 117 RAIQFTVRAPRELARYIAHKGSITVDGTSLTVNAV----NGAEFELTIVPHTLSETIMAE 172 Query: 179 LQAGSKVNLEIDLIARYVERML 200 Q G +VNLE+DL+ARY+ER+L Sbjct: 173 YQPGRRVNLEVDLLARYLERLL 194 >VC2270 [H] COG0307 Riboflavin synthase alpha chain Vch Vibrio cholerae Length = 217 Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/203 (46%), Positives = 131/203 (64%), Gaps = 10/203 (4%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLNIDAGTLPMADVSLGDSIALNGACMTVVEKTA 60 MFTGIV A+G +T++ P G D V +++D G L M DV LGDSIA NG C+TVV Sbjct: 1 MFTGIVEAVGKLTAIIP--KGSD--VTISVDVGKLDMGDVKLGDSIATNGVCLTVVAFDQ 56 Query: 61 QGFTVDVSRESLRLT--AGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGLVHSFEPVG 118 + F+ D+S E+L+ + A VNLEKA+ R GGH+VSGHVDG+G + PVG Sbjct: 57 RSFSADLSMETLKKSGFAQYQVGDRVNLEKAMLPTTRFGGHIVSGHVDGVGEIVERIPVG 116 Query: 119 ESRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKH 178 + +L V+ P + KY+A KGSI V+G+SLTVN + A F + ++PHT TT+ Sbjct: 117 RAVDLWVNMPAEISKYVAEKGSITVDGISLTVNDLRKNA----FKLTIVPHTSAETTIDE 172 Query: 179 LQAGSKVNLEIDLIARYVERMLS 201 Q G +VNLE+D++ARY+ER+L Sbjct: 173 FQVGRRVNLEVDVLARYMERLLQ 195 >DR0154 [H] COG0307 Riboflavin synthase alpha chain Dra Deinococcus radiodurans Length = 214 Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 100/213 (46%), Positives = 134/213 (62%), Gaps = 16/213 (7%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLNIDAGTLPMADVSLGDSIALNGACMTVVEKTA 60 MFTGI+ IG +T AA + + + I A T AD+ LG+SIA G C+TV Sbjct: 1 MFTGIIEQIGRVTH----AAEQNGNLAVTI-APTQMWADLVLGESIACGGTCLTVTGWDE 55 Query: 61 QGFTVDVSRESLRLTA-GLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGLVHSFEPVGE 119 Q F VD+SRE+L TA +A EVNLE+A+T R GGH+VSGHVDG+G V Sbjct: 56 QSFCVDLSRETLAKTAPHWEAGQEVNLERAMTAQARFGGHIVSGHVDGVGEVLEVREEPG 115 Query: 120 SRELIVDAPKALGKYLAYKGSIVVNGVSLTV--------NRVEDLADACRFSINLIPHTV 171 + + V AP++L KYL KGS+ V+GVSLT+ +R E D F++ L+PHT+ Sbjct: 116 AYTMRVRAPRSLAKYLTPKGSVTVDGVSLTLVDVGGPAGSRPEWPLD--EFTLWLVPHTL 173 Query: 172 EVTTLKHLQAGSKVNLEIDLIARYVERMLSSSA 204 EVTTLKH +AG++VNLE D +A+YVER+L+ A Sbjct: 174 EVTTLKHWRAGTRVNLEADQVAKYVERLLAVGA 206 >XF0952 [H] COG0307 Riboflavin synthase alpha chain Xfa Xylella fastidiosa 9a5c Length = 200 Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 97/202 (48%), Positives = 121/202 (59%), Gaps = 10/202 (4%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLNIDAGTLPMADVSLGDSIALNGACMTVVEKTA 60 MFTGI+ +G + + + G D VR + GTLP ++VS G+SIA+NG C+TV A Sbjct: 1 MFTGIIGGVGRLAA--RVRQGGD--VRFTFEVGTLPFSEVSYGESIAVNGVCLTVTAFDA 56 Query: 61 QGFTVDVSRESLRLTAGLDAP--GEVNLEKALTLAERLGGHLVSGHVDGLGLVHSFEPVG 118 F D S E+L LT P +NLE+A+ +RLGGHLVSGHVDG+G V S Sbjct: 57 LCFQADASTETLALTTLGQLPEGATLNLERAMCPTDRLGGHLVSGHVDGIGRVLSVHEDA 116 Query: 119 ESRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLADACRFSINLIPHTVEVTTLKH 178 ++ P L KY+A KGSI V+GVSLTVN V +A F + LIPHTV T Sbjct: 117 RAQRWSFAVPVPLLKYVAKKGSICVDGVSLTVNAV----NAEGFEVALIPHTVAHTRFSR 172 Query: 179 LQAGSKVNLEIDLIARYVERML 200 G VNLEIDLIARYVER+L Sbjct: 173 TVIGEAVNLEIDLIARYVERLL 194