BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3570.p         (157 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0722 [NU] COG4970 Tfp pilus assembly protein FimT Rso Ralston...    67   2e-11
RSc0716 [NU] COG4970 Tfp pilus assembly protein FimT Rso Ralston...    65   4e-11
PA4550 [NU] COG4970 Tfp pilus assembly protein FimT Pae Pseudomo...    54   1e-07
RSc2679 [NU] COG4970 Tfp pilus assembly protein FimT Rso Ralston...    50   1e-06
XF0028 [NU] COG4970 Tfp pilus assembly protein FimT Xfa Xylella ...    42   4e-04

>RSc0722 [NU] COG4970 Tfp pilus assembly protein FimT Rso Ralstonia
           solanacearum
          Length = 203

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 33/174 (18%)

Query: 4   HGFTLIELLVVLLITALILAAGVPVLRDLSSEQQLATVGNDFFHAVQLTRSEALRAGRRA 63
            GFTL+EL+V + I +++L    P   D   +Q+L +  +    A+   R+ AL      
Sbjct: 14  RGFTLLELMVTIAIISIMLVLVAPSFSDFLRKQRLLSAADSVASAIGQARTRALAQSAYV 73

Query: 64  EMRPVEDDDWQTGWQI-SVGQQ-----------VLARHPPLAHGIAVAYTS--------- 102
            + P+ + DW  GW++ S GQ            +L ++  L +G+ V Y S         
Sbjct: 74  TIAPI-NGDWANGWRVFSEGQNPDGIYNPSTDTLLNQYDALTNGLKVTYNSTAYVGGSGN 132

Query: 103 -GGELVAYQANG-------QPVTRGTW---YFSGGTHARAVAINFLGRARICNP 145
             G  + Y  NG       QP     +   Y  G   AR + +N LGRAR C+P
Sbjct: 133 ASGNYLIYSPNGYTASKIKQPQVTAAFNVAYQDGTGPARIIIVNALGRARTCDP 186


>RSc0716 [NU] COG4970 Tfp pilus assembly protein FimT Rso Ralstonia
           solanacearum
          Length = 186

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 3   KHGFTLIELLVVLLITALILAAGVPVLRDLSSEQQLATVGNDFFHAVQLTRSEALRAGRR 62
           + G TL EL +VL I A++    +P   D    + +  + + F  A  L R+ A      
Sbjct: 7   QAGVTLAELTMVLAILAILAVFAMPAGLDWWRRETVIVLADRFASAASLARATARNRRIW 66

Query: 63  AEMRPVED-DDWQTGWQI---------------SVGQQVLARHPPLAHGIAVAYTS---G 103
             + P E    W  GW +                    ++A  PP+   +  A+ S   G
Sbjct: 67  VHLGPREAASGWSAGWALYTTASPRTWAARTAPDTDDVLIAVSPPVVPSVDFAFISSQKG 126

Query: 104 GELVAY-------QANGQPVTRGTWYFSGGTHARAVAINFLGRARICNPVTDGQC 151
            + ++Y        +NG P++ GT   + G H R V INF GR R+CNP TD  C
Sbjct: 127 VDTISYAPVGYSRTSNGAPLS-GTLTIASGAHVRRVRINFAGRVRVCNPATDRSC 180


>PA4550 [NU] COG4970 Tfp pilus assembly protein FimT Pae Pseudomonas
          aeruginosa
          Length = 168

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 44/77 (57%)

Query: 5  GFTLIELLVVLLITALILAAGVPVLRDLSSEQQLATVGNDFFHAVQLTRSEALRAGRRAE 64
          GFTLIELL+++++ A++ +  +P  + L+   +L +   +    +Q  RSEA+   R   
Sbjct: 9  GFTLIELLIIVVLLAIMASFAIPNFKQLTERNELQSAAEELNAMLQYARSEAVSQRRAIS 68

Query: 65 MRPVEDDDWQTGWQISV 81
          ++ ++D DW  G  I V
Sbjct: 69 IQALKDKDWGKGLSIGV 85


>RSc2679 [NU] COG4970 Tfp pilus assembly protein FimT Rso Ralstonia
           solanacearum
          Length = 157

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 4   HGFTLIELLVVLLITALILAAGVPVLRDLSSEQQLATVGNDFFHAVQLTRSEALRAGRRA 63
            G TL ELLV L + ++++   VP    L + Q+      D   A+ L RSEA++    A
Sbjct: 11  RGVTLPELLVGLAVLSILIVIAVPSFSGLIATQRARNASLDLSAAITLARSEAVKQNTTA 70

Query: 64  EMRPVEDDDWQTGWQISVGQQVLARHPPLAHGIAVAYTSGGELVAYQANGQP 115
            +      +W TGW ++V   V+    P   G+ +A ++G  L +   +G+P
Sbjct: 71  TVS--STGNWATGWALAVNSTVIRTFGPY-TGVTIAPSNGNTL-SIGNDGRP 118


>XF0028 [NU] COG4970 Tfp pilus assembly protein FimT Xfa Xylella
          fastidiosa 9a5c
          Length = 187

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)

Query: 4  HGFTLIELLVVLLITALILAAGVPVLRDLSSEQQLATVGNDFFHAVQLTRSEALRAG 60
          +GF+ +EL+V + I A++     P   +L + ++L +  N+   ++QL R+EA+R G
Sbjct: 13 YGFSTVELMVTIAILAILAGLAYPSFMNLINGERLTSSANELVASLQLARTEAIRLG 69