BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3568.p         (203 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4553 [NU] COG4726 Tfp pilus assembly protein PilX Pae Pseudomo...    39   0.008
aq_1210 [R] COG0390 ABC-type uncharacterized transport system, p...    34   0.24 
HP1400 [P] COG4772 Outer membrane receptor for Fe3+-dicitrate Hp...    31   1.7  
jhp1426 [P] COG4772 Outer membrane receptor for Fe3+-dicitrate j...    31   2.2  
BMEI1137 [L] COG0587 DNA polymerase III, alpha subunit Bme Bruce...    30   2.8  

>PA4553 [NU] COG4726 Tfp pilus assembly protein PilX Pae Pseudomonas
          aeruginosa
          Length = 195

 Score = 38.9 bits (89), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 33/55 (60%)

Query: 6  QQRGATLMIALMLLSVILLLGAATTSLLLLDERAERNHREHAQAHLAAQAALEDA 60
          QQRGATL+IAL +L ++ LL  ++   ++L+ R   N  E  +   AA++ L + 
Sbjct: 7  QQRGATLVIALAILVIVTLLAVSSMREVVLESRITGNVIEQTRLQNAAESGLREG 61


>aq_1210 [R] COG0390 ABC-type uncharacterized transport system, permease
           component Aae Aquifex aeolicus
          Length = 244

 Score = 33.9 bits (76), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 23  LLLGAATTSLLLLDERAE---RNHREHAQAHLAAQAALEDACEDILR 66
           L++G    SL L  +R +   +N +E  +A +A  A L  ACED++R
Sbjct: 123 LIIGNTLNSLSLFYDRIKGEIKNRKEEIEAKVALGATLLQACEDVIR 169


>HP1400 [P] COG4772 Outer membrane receptor for Fe3+-dicitrate Hpy
           Helicobacter pylori 26695
          Length = 842

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 74  QFNSTLGCRTDAAGAG---LCLGRNERSGWNPAQLHG 107
           Q+ +T  C T  +G G   LC G N  SGW P   HG
Sbjct: 448 QYLNTNECATKTSGEGAGFLCEGANVMSGWKPHIKHG 484


>jhp1426 [P] COG4772 Outer membrane receptor for Fe3+-dicitrate jHp
           Helicobacter pylori J99
          Length = 841

 Score = 30.8 bits (68), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 74  QFNSTLGCRTDAAGAG---LCLGRNERSGWNPAQLHG 107
           Q+ +T  C T  +G G   LC G N  SGW P   HG
Sbjct: 447 QYLNTNECATKTSGEGAGFLCEGPNVMSGWKPHIKHG 483


>BMEI1137 [L] COG0587 DNA polymerase III, alpha subunit Bme Brucella melitensis
          Length = 1178

 Score = 30.4 bits (67), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 39   AERNHREHAQAHLAAQAALEDACEDILRHRRIEPEQFNSTLGCRTDAAG--AGLCLGRNE 96
            +E  HRE         A   D   D+L   R++     S    R  +AG  AG    R E
Sbjct: 974  SEMLHREFQAVGFYLSAHPLDEYRDVLNRMRVQSWADFSAAVKRGASAGRLAGTVTARQE 1033

Query: 97   RSGWNPAQLHGPLALSASYGQFTGRRFRPGLEAPRYLIE 135
            R      ++ G + LS + GQF    F  GL   R L+E
Sbjct: 1034 RKTRTGNKM-GIVQLSDASGQFEAVLFSEGLAQYRDLLE 1071