BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3566.p         (171 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0727 Non COG                                                        67   2e-11
PA4551 [NU] COG4967 Tfp pilus assembly protein PilV Pae Pseudomo...    55   7e-08
NMB0887 [NU] COG4967 Tfp pilus assembly protein PilV Nme Neisser...    48   1e-05
RSp1291 Non COG                                                        44   2e-04
VC0861 [NU] COG4967 Tfp pilus assembly protein PilV Vch Vibrio c...    44   2e-04

>RSc0727 Non COG
          Length = 205

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 14/159 (8%)

Query: 3   GRCRGFSMIEVLVAILVIGTGALAMVMLQLHALRSSQDSGLHARATLMAQELAELRSAMP 62
           G+  GF+M+E L+A+L++  G L++  L L + R +Q +   A   L+A  +A+ R  + 
Sbjct: 7   GKALGFTMLEALIAVLIVAVGVLSVANLLLKSYRFTQQASYDAMGQLLAANMAD-RIRVN 65

Query: 63  HPVGTSDPFLFSLSPGKALPAQVD----------CELAACSPSDFTRAALADWTGRLVRD 112
                SD ++F       +P               +++A   +      LA+WT  +   
Sbjct: 66  SGQLASDAYVFDTGAASTVPVSTSFYLSNGSTGCTDVSAVCANAAVNFDLAEWTSAVRAT 125

Query: 113 FPHARVTVCRDG---RSRTPEDWQCDDQGSAPVVLKLGW 148
            P  R  +C D     S +   W C +  + P+V+K+GW
Sbjct: 126 LPGGRGVICHDNPAYASNSGFSWPCSNSANDPLVVKVGW 164


>PA4551 [NU] COG4967 Tfp pilus assembly protein PilV Pae Pseudomonas
           aeruginosa
          Length = 185

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 7   GFSMIEVLVAILVIGTGALAMVMLQLHALRSSQDSGLHARATLMAQELAELRSAMPHPVG 66
           GFSMIEVLVA+L+I  G L M+ +Q   ++ + DS    +A ++   L E   A P  + 
Sbjct: 14  GFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALY 73

Query: 67  TSDPFL-----FSLSPGKALPAQVDCELAACSP-SDFTRAALADWTGRLVRDFPHARVTV 120
                +     F  + G A P       ++C+P  D  +  L  W  ++  + P A   +
Sbjct: 74  DVKDQMATQSDFFKAKGSAFPTAP----SSCTPLPDAIKDRLGCWAEQVKNELPGAGDLL 129

Query: 121 CRDG---RSRTPEDWQCDDQGSAPVVLKLGWR-RIGAATPSTVASA 162
             D    RS  P D  CD +GS  + ++L WR + GA   +  +SA
Sbjct: 130 KSDYYICRSSKPGD--CDGKGSM-LEIRLAWRGKQGACVNAADSSA 172


>NMB0887 [NU] COG4967 Tfp pilus assembly protein PilV Nme Neisseria
           meningitidis MC58
          Length = 204

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%)

Query: 7   GFSMIEVLVAILVIGTGALAMVMLQLHALRSSQDSGLHARATLMAQELAELRSAMPHPVG 66
           G ++IEVLVA+LV+  G LA++ +QL  + S +++      + + Q L E     P    
Sbjct: 17  GMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDS 76

Query: 67  TSDPFLFSLSPGKALPAQVDCEL---AACSPSDFTRAALADWTGRLVRDFPHA---RVTV 120
            S+   ++L  G    + VD +    A  +      A L  ++  L    P A      V
Sbjct: 77  DSNKKNYNLYMGNHTLSAVDGDFAIDAMKTKGQLAEAQLKRFSYELKNALPDAAAIHYAV 136

Query: 121 CRDGRSRTPE------DWQCDDQGSAPVVLKLGW 148
           C+D     P          CD++ +   ++K+ W
Sbjct: 137 CKDSSGNAPTLSGNAFSSNCDNKANGDTLIKVLW 170


>RSp1291 Non COG
          Length = 179

 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 21/165 (12%)

Query: 2   RGRCRGFSMIEVLVAILVIGTGALAMVMLQLHALRSSQDSGLHARATLMAQEL-AELRSA 60
           R R  GFSMIE L+ ++VI  G L +  +Q  ++  +Q++ + +   L  + L A + + 
Sbjct: 6   RRRQAGFSMIETLITLVVISVGLLGLAKIQAASISYTQNTRVRSLIALQTESLAAAMHAN 65

Query: 61  MPHPVGTSDPFLFSLSPGK------ALPAQVDCELAACSPSDFTRAALADWTGRLVRDFP 114
                    P  F++S          L A V    +AC+PS      +  W   +   FP
Sbjct: 66  KAFWAAGLAPATFTVSAATVTDASGTLNASVSGCSSACTPSQLAAYDVQTWASAMNAKFP 125

Query: 115 HARVTVCRDGRSRTPEDWQCDDQGSAPV--VLKLGWRRIGAATPS 157
               TV             C    S PV  +  + W     A  S
Sbjct: 126 SYSATV------------TCSTSVSVPVSCIATVSWNEKSVAINS 158


>VC0861 [NU] COG4967 Tfp pilus assembly protein PilV Vch Vibrio cholerae
          Length = 137

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 1  MRGRCRGFSMIEVLVAILVIGTGALAMVMLQLHALRSSQDSGLHARA--TLMAQELAELR 58
          MR +  GFS+IEV+++ ++IG GAL +V LQ + +    D  +H+     L  Q+L   R
Sbjct: 1  MRNKQSGFSLIEVMISFVLIGVGALGLVKLQAY-IEQRADYAMHSIEALNLAEQKLEWFR 59

Query: 59 S 59
          S
Sbjct: 60 S 60