BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3553.p         (126 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0788 [S] COG3686 Predicted membrane protein Rso Ralstonia sol...   119   2e-27
PA0540 [S] COG3686 Predicted membrane protein Pae Pseudomonas ae...   108   3e-24
NMA1176 [S] COG3686 Predicted membrane protein NmA Neisseria men...    78   4e-15
all4663 [S] COG3686 Predicted membrane protein Nos Nostoc sp. PC...    74   1e-13
NMB0979 [S] COG3686 Predicted membrane protein Nme Neisseria men...    72   2e-13

>RSc0788 [S] COG3686 Predicted membrane protein Rso Ralstonia solanacearum
          Length = 127

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 81/121 (66%)

Query: 1   MTLADWCILIAGLMPVLTIAVAKYGRRDFDNAEPRAWLDQQTGLRRRADYAHRNHFEAFP 60
           M +A WC+LIA L+P + I +A++     DN +PR W    TG+ +RA+ A +NHFE FP
Sbjct: 1   MPIALWCVLIAALLPYVCIQIARFTGPRRDNRQPRQWAAGLTGVAQRANGAQQNHFEVFP 60

Query: 61  FFAAAVLVAQQVGAPQAQIDIAALVFIAARILYTVLYLTDKPSARSAVWIVGYLSVIALF 120
           FFA AVLVA   G+P  +++  A+ FIA R+LYTV YL D  +ARS VW VG +  IALF
Sbjct: 61  FFAVAVLVAILGGSPVDRVNGLAVAFIAVRVLYTVCYLADWATARSLVWTVGLVLTIALF 120

Query: 121 V 121
           V
Sbjct: 121 V 121


>PA0540 [S] COG3686 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 128

 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 4/128 (3%)

Query: 1   MTLADWCILIAGLMPVLTIAVAKYGRRDFD---NAEPRAWLDQQTGLRRRADYAHRNHFE 57
           MT+A WC+LIA  +P +  ++AK+G   +    NA+PRA+L    G RRRA+ A  N FE
Sbjct: 1   MTIAFWCVLIAIFLPYVCTSIAKFGGEGYGGRANADPRAFLGSLEGFRRRANNAQLNAFE 60

Query: 58  AFPFFAAAVLVAQQVG-APQAQIDIAALVFIAARILYTVLYLTDKPSARSAVWIVGYLSV 116
             P FAAAV++A  VG A QA +D  A+ +I +R+LY + YL D    RS VW VG L +
Sbjct: 61  VTPAFAAAVIIAHLVGNASQATLDSLAIAWITSRLLYVICYLADWGPLRSLVWFVGMLLI 120

Query: 117 IALFVIAA 124
            A FV++A
Sbjct: 121 AAFFVVSA 128


>NMA1176 [S] COG3686 Predicted membrane protein NmA Neisseria meningitidis
           Z2491
          Length = 127

 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 3/127 (2%)

Query: 1   MTLADWCILIAGLMPVLTIAVAKY--GRRDFDNAEPRAWLDQQTGLRRRADYAHRNHFEA 58
           MT A WCILIA L+P+   A AK   G R  DN  PR +L +  G   RA  A +N FEA
Sbjct: 1   MTFAYWCILIAYLLPLFCAAYAKKAGGFRFKDNHNPRDFLARTQGTAARAHAAQQNGFEA 60

Query: 59  FPFFAAAVLVAQQVG-APQAQIDIAALVFIAARILYTVLYLTDKPSARSAVWIVGYLSVI 117
           F  FAAAVL A   G A QA ++  A +FI  R+ +   Y+ DK + RS +W+ G++  +
Sbjct: 61  FAPFAAAVLTAHATGNAGQATVNTLAGLFILFRLAFIWCYIADKAALRSLMWVGGFVCTV 120

Query: 118 ALFVIAA 124
            LFV+AA
Sbjct: 121 GLFVVAA 127


>all4663 [S] COG3686 Predicted membrane protein Nos Nostoc sp. PCC 7120
          Length = 131

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 14  MPVLTIAVAKYGRRDFDNAEPRAWLDQQTGLRRRADYAHRNHFEAFPFFAAAVLVAQQVG 73
           +P L +  A+  R  +D + PRA  D+     +RA +AH+N FEAF  FAAA L+A   G
Sbjct: 17  LPFLVVGYAR-ARAGYDVSAPRAMFDKLPPYGQRATWAHQNSFEAFMVFAAAALMAYVTG 75

Query: 74  APQAQIDIAALVFIAARILYTVLYLTDKPSARSAVWIVGYLSVIALFVIA 123
                   AA+ F+ AR+LY++ Y+ + P  RS ++ +G L    LFV++
Sbjct: 76  VNSPTAAWAAIAFLVARLLYSIFYILNIPLLRSLMYAIGSLGSGTLFVLS 125


>NMB0979 [S] COG3686 Predicted membrane protein Nme Neisseria meningitidis
           MC58
          Length = 127

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/127 (44%), Positives = 71/127 (55%), Gaps = 3/127 (2%)

Query: 1   MTLADWCILIAGLMPVLTIAVAKY--GRRDFDNAEPRAWLDQQTGLRRRADYAHRNHFEA 58
           MT A WCILIA L+P+   A AK   G R  DN  PR +L    G   RA  A +N FEA
Sbjct: 1   MTFAYWCILIACLLPLFCAAYAKKAGGFRFKDNHNPRGFLAHTQGAAARAHAAQQNGFEA 60

Query: 59  FPFFAAAVLVAQQVG-APQAQIDIAALVFIAARILYTVLYLTDKPSARSAVWIVGYLSVI 117
           F  FAAAVL A   G A Q+ I+  A +FI  R+ +   Y+ DK + RS +W  G+   +
Sbjct: 61  FAPFAAAVLTAHATGNAAQSTINTLACLFILFRLAFIWCYIADKAAMRSLMWAGGFACTV 120

Query: 118 ALFVIAA 124
            LFV AA
Sbjct: 121 GLFVAAA 127