BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3548.p         (110 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO0865 Non COG                                                        81   5e-16
AGc1930 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans...    30   1.4  
SP1524 [E] COG1168 Bifunctional PLP-dependent enzyme with beta-c...    28   5.6  
CAC1546 [F] COG0213 Thymidine phosphorylase Cac Clostridium acet...    27   7.7  

>YPO0865 Non COG
          Length = 106

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 2/94 (2%)

Query: 1  MREHRYRITLEHLATASEGQVLHEPLRFEAGNHDDIFSIVSRLRGRGQ--FDDDTSAQLA 58
          M  +RYRIT+E L       +   P+ FEA NHD+I SI+ RL+ R    F  + +A  A
Sbjct: 1  MPGYRYRITIEPLTDRKGEAIDKAPVTFEAENHDEILSIIERLQAREDLGFGQEKTAAFA 60

Query: 59 LGIKLFGEVMLKNRKHQLFAEIQPAFREFIMKLK 92
          LG+KLF E M++NRKH LF  ++ AF++F++ LK
Sbjct: 61 LGLKLFSETMMENRKHPLFEPLRGAFKDFMILLK 94


>AGc1930 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport
           systems, periplasmic components Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 347

 Score = 30.0 bits (66), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 17  SEGQVLHEPLRFEAGNHDDIF----SIVSRLRGRGQFDDDTSAQLAL--GIKLFGEVMLK 70
           S G  + EP+    G+ D +F    S++  L+ +G  DDD S  L    G+ L+G  +L 
Sbjct: 173 SIGFPVREPM-LAKGDVDAVFGFAFSVILNLKKQGIADDDISTILMAEHGLNLYGNAVLV 231

Query: 71  NRKHQLFAEIQP-AFREFIMKL 91
           N     FAE  P A + F+  L
Sbjct: 232 NTD---FAEKNPEAVKGFLKAL 250


>SP1524 [E] COG1168 Bifunctional PLP-dependent enzyme with
           beta-cystathionase and maltose regulon repressor
           activities Spn Streptococcus pneumoniae TIGR4
          Length = 388

 Score = 28.1 bits (61), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 66  EVMLKNRKHQLFAEIQPAFREFIMKLKSQGK 96
           ++ L   KHQ F  I PAF+ F + L S  K
Sbjct: 204 DLTLFGHKHQSFNTINPAFKNFAIVLSSATK 234


>CAC1546 [F] COG0213 Thymidine phosphorylase Cac Clostridium acetobutylicum
          Length = 433

 Score = 27.3 bits (59), Expect = 7.7,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 22  LHEPLRFEAGNHDDIFSIVSRLRGRGQFDDDTSAQLALGIKLFGEVMLKNR-------KH 74
           + +PL F  GN  ++   +  L+G+G  +D T   L LG ++   VML  +       K 
Sbjct: 239 MSQPLGFAVGNALEVKEAIDTLKGQGP-EDLTELVLTLGSQM---VMLAKKANTLEEAKE 294

Query: 75  QLFAEIQP--AFREFIMKLKSQGKAAAGAD 102
           +L   I+   A  +F + L+SQG  ++  D
Sbjct: 295 KLVEVIKSGKALEKFKLFLESQGGDSSIVD 324