BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3538.p (266 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1352 [KT] COG3279 Response regulator of the LytR/AlgR family ... 238 1e-62 VCA0850 [KT] COG3279 Response regulator of the LytR/AlgR family ... 193 4e-49 XF1626 [KT] COG3279 Response regulator of the LytR/AlgR family X... 125 9e-29 PA5261 [KT] COG3279 Response regulator of the LytR/AlgR family P... 112 6e-25 VC0693 [KT] COG3279 Response regulator of the LytR/AlgR family V... 103 4e-22 >RSc1352 [KT] COG3279 Response regulator of the LytR/AlgR family Rso Ralstonia solanacearum Length = 270 Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 144/271 (53%), Positives = 176/271 (64%), Gaps = 11/271 (4%) Query: 3 APTALIAEDEPLLAQALRQALARCWPELPAPQLAVNGDEALEQA----LLLLPDVLFLDI 58 AP LIA+DEP LA +L LA WP +G AL+ PDV+FLDI Sbjct: 4 APRLLIADDEPALADSLIAELAALWPGARIAPAVHDGQSALDAIDRPRAGEAPDVVFLDI 63 Query: 59 KMPGRSGLEVARELAEEWPAQRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQERLAL 118 +MPG SG+EVARELA AQRP L+VFVTAYD +AL AFE+AA+DY+LKPV ERLA Sbjct: 64 RMPGLSGIEVARELAGR--AQRP--LVVFVTAYDQFALDAFEQAAVDYVLKPVQTERLAA 119 Query: 119 TVTRLQSLLAQRAAGEQEAQLERALAQL--RTLSTPFTEEA-PPRLDYIRAAVGNKVRMI 175 TV RL + LA+R G A + LAQL R P A L +I+A VG ++R I Sbjct: 120 TVRRLTARLAERPDGGAAADPAQTLAQLVERLAGLPAAGGANGAYLRFIKALVGQEIRFI 179 Query: 176 AVDDVLYFEATDKYVNVVTAQGDALIRTSLRELIPQLDGRQFWQIHRSTVVQVRQIQAAV 235 V++VLY EATDKYVNVVT G +LIRTSLREL+ QLD + FWQ+HR TVV V + +AV Sbjct: 180 PVEEVLYLEATDKYVNVVTHAGASLIRTSLRELLSQLDPQHFWQVHRGTVVNVAHVASAV 239 Query: 236 RDESGKLSLTLHGRPEKLAVSRLFAHLFRQM 266 G+L+L + GR E L V+R +AHLFRQM Sbjct: 240 HLSLGRLALKIRGRTETLPVARQYAHLFRQM 270 >VCA0850 [KT] COG3279 Response regulator of the LytR/AlgR family Vch Vibrio cholerae Length = 261 Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 115/265 (43%), Positives = 158/265 (59%), Gaps = 17/265 (6%) Query: 5 TALIAEDEPLLAQALRQALARCWPELPAPQLAVNGDEALEQALLLLPDVLFLDIKMPGRS 64 TA++A+DEPLL L + LA WP L A NG AL+ PDV+FLDI+MP Sbjct: 7 TAVLADDEPLLRHHLNKLLAELWPALEIVASAENGQIALQAIEQHQPDVVFLDIRMPKMD 66 Query: 65 GLEVARELAEEWPAQRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQERLALTVTRLQ 124 G+EVAR L + Q PL+VF+TAYD+YA+ AFE AIDYLLKP+S RLA +LQ Sbjct: 67 GIEVARRLLQ----QPKVPLVVFITAYDEYAVSAFETHAIDYLLKPLSSSRLASCCEKLQ 122 Query: 125 SLLAQRAAGEQEAQLERALAQLRTLSTPFTEEAPPRLD-YIRAAVGNKVRMIAVDDVLYF 183 L + A + LAQL + T P+ +++A+ G ++ +IAV+++LY Sbjct: 123 QQLRRNVAPSND------LAQLMSQFEQLTRTVKPQYQVWLKASKGEEIHLIAVNELLYV 176 Query: 184 EATDKYVNVVTAQG----DALIRTSLRELIPQLDGRQFWQIHRSTVVQVRQIQAAVRDES 239 +A DKY+++ G + L+R+SL+EL+ QLD QFWQIHRS VV V +I RD Sbjct: 177 KAEDKYLSLYKVHGATTHEYLLRSSLKELLAQLDPNQFWQIHRSIVVNVGKIDKVTRDFG 236 Query: 240 GKLSLTLHGRPEKLAVSRLFAHLFR 264 GK + +H +L VSR HLF+ Sbjct: 237 GK--MWVHIDRLQLPVSRALQHLFK 259 >XF1626 [KT] COG3279 Response regulator of the LytR/AlgR family Xfa Xylella fastidiosa 9a5c Length = 252 Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 127/251 (50%), Gaps = 23/251 (9%) Query: 7 LIAEDEPLLAQALRQALARCWPELPAPQLAVNGDEALEQALLLLPDVLFLDIKMPGRSGL 66 LIA+DEPL + LR L L A NG++ L L PD++ +DI MPG GL Sbjct: 5 LIADDEPLARERLRVLLQAQMQHLEVVAEAENGEQVLHDCQRLNPDLVLMDIAMPGIDGL 64 Query: 67 EVARELAEEWPAQRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQERLALTVTRLQSL 126 E AR L PA P +VF TAY D+AL AF+ AIDYL+KPV ERL + R+Q+ Sbjct: 65 ETARYL-RHLPA---CPAVVFCTAYGDHALSAFDVEAIDYLMKPVRAERLHAALKRVQTF 120 Query: 127 LAQRAAGEQEAQLERALAQLRTLSTPFTEEAPPRLDYIRAAVGNKVRMIAVDDVLYFEAT 186 +A R Q + E TP T ++ A + +R+I +D V Y +A Sbjct: 121 VAGRLREPQTSCDE----------TPRT--------HLCARIRGGLRLIPLDQVRYLQAD 162 Query: 187 DKYVNVVTAQGDALIRTSLRELIPQLDGRQFWQIHRSTVVQVRQIQAAVRDESGKLSLTL 246 +KYV + QG+ LI SL+ L + R F +IHR+ ++ ++ R G++ L Sbjct: 163 EKYVVICHEQGEDLIEESLKSLEKEFSDR-FVRIHRNCLIARAELTELRRCSDGQVQAVL 221 Query: 247 HGRPEKLAVSR 257 L VSR Sbjct: 222 RNVVTPLGVSR 232 >PA5261 [KT] COG3279 Response regulator of the LytR/AlgR family Pae Pseudomonas aeruginosa Length = 248 Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 91/259 (35%), Positives = 136/259 (52%), Gaps = 31/259 (11%) Query: 5 TALIAEDEPLLAQALRQALARCWPELPAPQL----AVNGDEALEQALLLLPDVLFLDIKM 60 LI +DEPL R+ LAR +L ++ A NG+EAL L PD++ LDI+M Sbjct: 2 NVLIVDDEPLA----RERLARLVGQLDGYRVLEPSASNGEEALTLIDSLKPDIVLLDIRM 57 Query: 61 PGRSGLEVARELAE-EWPAQRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQERLALT 119 PG GL+VA L E E P P ++F TA+D++AL+AF+ +A+ YL+KPV E LA Sbjct: 58 PGLDGLQVAARLCEREAP-----PAVIFCTAHDEFALEAFQVSAVGYLVKPVRSEDLAEA 112 Query: 120 VTRLQSLLAQRAAGEQEAQLERALAQLRTLSTPFTEEAPPRLDYIRAAVGNKVRMIAVDD 179 + + A R Q A L + P + + PR +I A + +I +++ Sbjct: 113 LKK-----ASRPNRVQLAALTK---------PPASGGSGPR-SHISARTRKGIELIPLEE 157 Query: 180 VLYFEATDKYVNVVTAQGDALIRTSLRELIPQLDGRQFWQIHRSTVVQVRQIQAAVRDES 239 V++F A KYV + AQG+ L+ L+ L + G +F +IHR+ +V +I+ R Sbjct: 158 VIFFIADHKYVTLRHAQGEVLLDEPLKALEDEF-GERFVRIHRNALVARERIERLQRTPL 216 Query: 240 GKLSLTLHG-RPEKLAVSR 257 G L L G + L VSR Sbjct: 217 GHFQLYLKGLDGDALTVSR 235 >VC0693 [KT] COG3279 Response regulator of the LytR/AlgR family Vch Vibrio cholerae Length = 237 Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 129/262 (49%), Gaps = 31/262 (11%) Query: 5 TALIAEDEPLLAQALRQALARCWPELPAPQLAVNGDEALEQALLLLPDVLFLDIKMPGRS 64 +AL+ +DE + L + LA ++ A N E L++ L PDV+FLDI+MP S Sbjct: 3 SALLIDDERFAREELAELLAESG-QIEVIGQASNAIEGLKKINQLKPDVVFLDIQMPQIS 61 Query: 65 GLEVARELAEEWPAQRPFPLIVFVTAYDDYALQAFERAAIDYLLKPVSQERLALTVTRLQ 124 G+E+ L E P +VFVTAYD YALQAFE A DYLLKPV ERLA TV R Sbjct: 62 GIELLSMLDPET-----MPEVVFVTAYDQYALQAFEDNAFDYLLKPVDTERLAKTVQR-- 114 Query: 125 SLLAQRAAGEQEAQLERALAQLRTLSTPFTEEAPPRLDYIRAAVGNKVRMIAVDDVLYFE 184 LL Q + +P T+ P LD I N++ ++ +++V + Sbjct: 115 -LLRQHKKSD---------------YSPLTQ---PSLDQIPCTGLNRIVLLPINEVEFAY 155 Query: 185 ATDKYVNVVTAQGDALIRTSLRELIPQLDGRQFWQIHRSTVVQVRQIQAAVRDESGKLSL 244 + VNV TAQ A + +L+ L + + HR +V ++ I+ E+G + Sbjct: 156 SDISGVNVQTAQQKATSQLTLKVL---EEKTALVRCHRQYLVNLKAIREIKLLENGLAEM 212 Query: 245 TLHGRPEKLAVSRLFAHLFRQM 266 H K+ VSR + ++M Sbjct: 213 ITHA-GHKVPVSRRYLKELKEM 233