BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3515.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ywcB [S] COG3162 Predicted membrane protein Bsu Bacillus subt...    36   0.018
Cgl0809 [S] COG3162 Predicted membrane protein Cgl Corynebacteri...    33   0.20 
MT3907_2 [Q] COG3319 Thioesterase domains of type I polyketide s...    29   2.6  
Rv3800c_2 [Q] COG3319 Thioesterase domains of type I polyketide ...    29   2.6  
NMB1571 [R] COG0795 Predicted permeases Nme Neisseria meningitid...    29   3.3  

>BS_ywcB [S] COG3162 Predicted membrane protein Bsu Bacillus subtilis
          Length = 102

 Score = 36.2 bits (82), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/83 (21%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 12 NPQFHAIARKRKLVVMTLFVVSALFYFSIPFITTFYPRIFHVQLFGAVNLGLVYAVLQYP 71
           P F A  ++++  ++   +   +FYFS+P +T+++    +    GAV+   ++A+ Q+ 
Sbjct: 12 TPSFQAFLKQKRAFIVPSAIFFFVFYFSLPVLTSYF-TFLNAPAIGAVSWAWLFAIAQFA 70

Query: 72 LGGLVAYAYAVHMRKLDQEVTRL 94
          +  +++  Y+      D+ V+ L
Sbjct: 71 MTWILSTVYSRRAAHFDKYVSAL 93


>Cgl0809 [S] COG3162 Predicted membrane protein Cgl Corynebacterium
          glutamicum
          Length = 93

 Score = 32.7 bits (73), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 36/78 (46%)

Query: 9  MYQNPQFHAIARKRKLVVMTLFVVSALFYFSIPFITTFYPRIFHVQLFGAVNLGLVYAVL 68
          M  +P+F  +  K +     + V   L+Y     + +F        +FGA+N+GL++  L
Sbjct: 1  MQASPEFGELRSKFRSFAFPMTVAFFLWYVVYVLVASFASEWMATPVFGAINIGLIFGFL 60

Query: 69 QYPLGGLVAYAYAVHMRK 86
          Q+    ++ Y Y +   K
Sbjct: 61 QFVTTFVITYIYVMFANK 78


>MT3907_2 [Q] COG3319 Thioesterase domains of type I polyketide synthases
          or non-ribosomal peptide synthetases MtC Mycobacterium
          tuberculosis CDC1551
          Length = 273

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 6/46 (13%)

Query: 46 FYPRIFHVQLFGAVNLGLVYAVLQYPLGGLVAYAYAVHMRKLDQEV 91
          + P++  +Q  G       Y ++ + LGG++AYA A+ +R+L ++V
Sbjct: 54 YVPKLIEMQGDGP------YVLVGWSLGGVLAYACAIGLRRLGKDV 93


>Rv3800c_2 [Q] COG3319 Thioesterase domains of type I polyketide synthases
          or non-ribosomal peptide synthetases Mtu Mycobacterium
          tuberculosis H37Rv
          Length = 273

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 6/46 (13%)

Query: 46 FYPRIFHVQLFGAVNLGLVYAVLQYPLGGLVAYAYAVHMRKLDQEV 91
          + P++  +Q  G       Y ++ + LGG++AYA A+ +R+L ++V
Sbjct: 54 YVPKLIEMQGDGP------YVLVGWSLGGVLAYACAIGLRRLGKDV 93


>NMB1571 [R] COG0795 Predicted permeases Nme Neisseria meningitidis MC58
          Length = 356

 Score = 28.9 bits (63), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 11  QNPQFHAIARKRKLVVMTLFVVSALFYFSIPFITTFYPRIFHVQLFGAVNLGLVY 65
           QN + +AIA  RKLV      V AL  F+    TT +  +  ++LFG + LGL++
Sbjct: 260 QNTRIYAIAWWRKLVYPAAAWVMALVAFAFTPQTTRHGNM-GLKLFGGICLGLLF 313