BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3507.p         (175 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0533 Non COG                                                        43   3e-04
YPO2760 Non COG                                                        33   0.32 
ECU02g1460 Non COG                                                     31   1.7  
PAB0305 [R] COG1079 Uncharacterized ABC-type transport system, p...    30   2.3  
PA4546 [T] COG0642 Signal transduction histidine kinase Pae Pseu...    30   3.0  

>RSp0533 Non COG
          Length = 146

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 26/139 (18%)

Query: 10  NVSQLINGDVHSVTGPTTTETRSSSEITETENSQRITEFQRKRINVLVKEWSAISGEKEV 69
           +V+ + NG   S  GP                 ++I++ QR RI   V E    +   E 
Sbjct: 7   SVTTIHNGQGDSAIGPI----------------RKISDLQRGRIAAKVHELKQATRLDER 50

Query: 70  EIYKIFMKDFGLRYFRELPIEHYSTVKETLEEWISAGAAKAVPIAVPEVVEAVHLERAQH 129
           E+Y + + DFGL    +L  + +    E L  WIS    +  P   P  V        + 
Sbjct: 51  ELYGVILADFGLADIGDLRRDQFKPAMEKLGRWIS--EVREDPTDAPAPV--------RR 100

Query: 130 QHGCPACVEKDASFARAQR 148
              C  C   ++   R +R
Sbjct: 101 DPPCAGCTRLNSKLTRTRR 119


>YPO2760 Non COG
          Length = 345

 Score = 33.1 bits (74), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 51  KRINVLVKEWSAISGEKEVEIYKIFMKDFGLRYFRELPIEHYSTVKETLEEWIS 104
           + I  LV + SA +GE+  +I++      G+++   LP  H+  + + L+  ++
Sbjct: 174 QNIQSLVAKLSAATGEQPTKIWQTLFDMVGVKHHDPLPARHFQLLSQFLQTKVA 227


>ECU02g1460 Non COG
          Length = 713

 Score = 30.8 bits (68), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 32/63 (50%)

Query: 27  TTETRSSSEITETENSQRITEFQRKRINVLVKEWSAISGEKEVEIYKIFMKDFGLRYFRE 86
           T E+ +S EI   +NSQ+I  +  K ++  +KE       +E EI    + +F   Y  E
Sbjct: 608 TGESLNSEEIYVLDNSQKIYIYIGKDVDASLKEAIFTDKTEENEILHRMIDEFYSYYDSE 667

Query: 87  LPI 89
           LP+
Sbjct: 668 LPV 670


>PAB0305 [R] COG1079 Uncharacterized ABC-type transport system, permease
           component Pab Pyrococcus abyssi
          Length = 302

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 119 VEAVHLERAQHQHGCPACVEKDASFARAQRELLALRALAFAISVLCGWLLYKMPTQL 175
           +  + L    H HG    VEK     +    +  L  LA  + ++  W L K P+ L
Sbjct: 103 ISILSLVSIWHSHGSSPSVEKIPMLGKGSFFISPLTPLAILVGIIVWWWLNKTPSGL 159


>PA4546 [T] COG0642 Signal transduction histidine kinase Pae Pseudomonas
           aeruginosa
          Length = 530

 Score = 29.6 bits (65), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 11  VSQLINGDVHSVTGPTTTETRSSSEITETEN----SQRITEF---QRKRINVLVKEWSAI 63
           + +L  G  H +  P    + ++  + E+E      +R+T+    Q KR+N++++    +
Sbjct: 310 LGRLTAGIAHEIRNPLGAISHAAQLLQESEELDAPDRRLTQIIQDQSKRMNLVIENVLQL 369

Query: 64  SGEKEVEIYKIFMKDFGLRYFRELP 88
           S  ++ E  ++ +K++  R+  E P
Sbjct: 370 SRRRQAEPQQLDLKEWLQRFVDEYP 394