BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3497.p (597 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 558 e-158 RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 528 e-149 RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 473 e-133 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 264 4e-70 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 248 2e-65 >YPO1229 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 595 Score = 558 bits (1437), Expect = e-158, Method: Compositional matrix adjust. Identities = 316/598 (52%), Positives = 417/598 (69%), Gaps = 5/598 (0%) Query: 1 MLTSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDNSLSTSLNDHARVIGDWVA 60 ML SIR+R++ A + +V S+ ++T NY +A A DN+L+ H+ I +WVA Sbjct: 1 MLDSIRSRILAACIIIVAGSLAINTFLNYSVANKYNNSAIDNTLTALTVSHSVSIAEWVA 60 Query: 61 EKTRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTR 120 KT+++ SL+D LT P A LKQ+ AGGF +V +GY DK F++ IPA YDPT R Sbjct: 61 SKTQMIMSLKDSALTADPLAALKQVAAAGGFINVYIGYADKTAIFSNPDGIPADYDPTGR 120 Query: 121 PWYKGAVEAGKPAAIP-YIST-SKALLVALAIPVMREGKLKAVLVGDVALDSVVETIKAI 178 PWY AV AGKP P YI ++ L+V A ++++G LK V+ DV + SV+ + AI Sbjct: 121 PWYLQAVNAGKPVVTPPYIDAGTQQLVVTFAWSIVQDGVLKGVIAADVTMGSVIANVNAI 180 Query: 179 HPTPESFGMLIDKNGRIIAHPNAELRFKQATDIAPEFAQLSSAADDKASAPMKIVVDGRA 238 HPT SFGMLI +G IIAHP L K DIAP L+ A+ P+ + G + Sbjct: 181 HPTDNSFGMLIGADGTIIAHPETLLTLKPLADIAPN---LNLQTLLTATVPVSTDISGSS 237 Query: 239 KLVRAQKIRGTDWSIVIAIDESEAMAGARSLLNTSLLSLILIVGIASVIGVAVTATAFRR 298 KL+ AQ + GT W V+A+D+S+A AG SLL TSL++L++I+ I++ + +T A Sbjct: 238 KLLLAQAVPGTQWFTVVALDKSQATAGIHSLLTTSLVTLVIIIFISAGVIALITQRALTP 297 Query: 299 LGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRM 358 L + QAM AI SGS DLTQRLP +G+DEVA I+RSFNQF +L VM IR SE+VR+ Sbjct: 298 LTHIQQAMDAISSGSADLTQRLPIEGRDEVAQIARSFNQFADKLSLVMAQIRGTSESVRV 357 Query: 359 ASNEIATANQDLSTRTESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQ 418 A+NEIA NQDLS RTESAAASL+QT+A++ +IS TV++S +AA+QA+ SA+E AS+ Sbjct: 358 AANEIAAGNQDLSGRTESAAASLQQTSAALEQISATVAQSASAARQANNAVFSASEDASR 417 Query: 419 GGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 478 GG V++ +TT+ IEK S +IG I +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 418 GGDVITKVITTMESIEKASGKIGDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 477 Query: 479 AHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGI 538 A EVR LA+RSA+AA+E+K L+E+TVS V++GS QVRQA M +IV+ +DV +++S I Sbjct: 478 AGEVRILAQRSAQAAKEIKALIESTVSSVASGSSQVRQASNAMTDIVSSVSDVTTIMSEI 537 Query: 539 ARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 596 A DEQMRGI E+N AV QLD+MVQQNAALV++S AASA LQAQA L T+ +F+I Sbjct: 538 TNAADEQMRGIHEINSAVAQLDTMVQQNAALVQESTAASAALQAQAADLTDTVNQFKI 595 >RSc0606 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 617 Score = 528 bits (1360), Expect = e-149, Method: Compositional matrix adjust. Identities = 296/599 (49%), Positives = 409/599 (68%), Gaps = 2/599 (0%) Query: 1 MLTSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDNSLSTSLNDHARVIGDWVA 60 +L SIR R++ VA+VV ++ ++ NY++ R+ DA +L + H I DWVA Sbjct: 18 VLNSIRTRILLTCVAIVVGALTLAGGLNYVVTRSYNDDAIRQNLQSVARGHIAGIDDWVA 77 Query: 61 EKTRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTR 120 KT++V +LQD L+ P LK + +GGF V VGYPDK KF D +P TYDPT R Sbjct: 78 SKTQMVVALQDAALSADPVPALKTVAASGGFISVYVGYPDKSYKFADPSGVPPTYDPTAR 137 Query: 121 PWYKGAVEAGKPAAIP-YISTSKA-LLVALAIPVMREGKLKAVLVGDVALDSVVETIKAI 178 PWYK A EAGKP P Y+S S L+V A+P++R+G LK V+ DV++D+V+ +KAI Sbjct: 138 PWYKQAAEAGKPVVTPPYVSASTGKLVVTFAVPILRDGGLKGVVASDVSMDAVIANVKAI 197 Query: 179 HPTPESFGMLIDKNGRIIAHPNAELRFKQATDIAPEFAQLSSAADDKASAPMKIVVDGRA 238 HPTP SFG L++ G+I+AHP+ + K TD++ + + + AA + P+++ V G A Sbjct: 198 HPTPASFGFLVNAAGKIVAHPDDKFTLKPVTDLSADLSDATLAALAQTDKPLQVNVGGAA 257 Query: 239 KLVRAQKIRGTDWSIVIAIDESEAMAGARSLLNTSLLSLILIVGIASVIGVAVTATAFRR 298 KL+ Q ++GTDW +V+A+D+S+A AG RSL+ TS+ L+++ +A+ I A+TA AFRR Sbjct: 258 KLLHRQGVQGTDWGLVVALDKSDATAGMRSLVTTSIGVLVVVALVAAAIVGAMTARAFRR 317 Query: 299 LGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRM 358 L + AM IGSGSGDLT+RLP G+DEVA I+RSFN F +L V+ IR S++VR Sbjct: 318 LSMIRDAMDDIGSGSGDLTKRLPADGQDEVAQIARSFNAFADKLTAVLQQIRLGSDSVRS 377 Query: 359 ASNEIATANQDLSTRTESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQ 418 A+ EIA N DLS RTE A+SLE+TA+SM E++ V ++ A+QA + +A+++A++ Sbjct: 378 AAQEIAAGNADLSQRTEEQASSLEETASSMEELTSIVKQNADNARQASSLAVNASDVATR 437 Query: 419 GGKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 478 GG VV V T+G I + S +I II VI+ IAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 438 GGSVVGQVVQTMGGINESSKKIADIIGVIESIAFQTNILALNAAVEAARAGEQGRGFAVV 497 Query: 479 AHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGI 538 A EVRSLA+RSA AA+E+K L+ +V RVS G+ V QAG TM EIV V ++ I Sbjct: 498 ASEVRSLAQRSAGAAKEIKALIHDSVDRVSNGTALVDQAGVTMAEIVEAVKRVTDIMGEI 557 Query: 539 ARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRIS 597 + A++EQ GI++VN+AV Q+D + QQNAALVEQ+AAA+ +L+ QA L +G FR+S Sbjct: 558 SAASEEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAAESLEEQARNLNDAVGSFRLS 616 >RSc3307 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 646 Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust. Identities = 268/597 (44%), Positives = 381/597 (63%), Gaps = 3/597 (0%) Query: 2 LTSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDNSLSTSLNDHARVIGDWVAE 61 ++S+R R++ A V+ ++ +S AA Y I R S + D +L+ + + I WV Sbjct: 48 MSSLRTRILVISSATVIGALALSGAATYAIVRASTLASIDQNLTAIASGNTLAIDKWVTA 107 Query: 62 KTRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTRP 121 K + V + + V P ++K + A GF VG+ DK T F+ P YDPT RP Sbjct: 108 KAQAVKATAEAVEYGDPHGLVKHMGDADGFPITTVGWTDK-TFFSTSAGTPKDYDPTARP 166 Query: 122 WYKGAVEAGKPAAI-PYISTSKAL-LVALAIPVMREGKLKAVLVGDVALDSVVETIKAIH 179 WYK A+ AGKP PY S + V+ A P+MR G L G V LD V E + A+H Sbjct: 167 WYKSAIAAGKPTVTKPYGDASTGVPYVSFAAPLMRNGAATGALSGAVPLDGVREVVAAVH 226 Query: 180 PTPESFGMLIDKNGRIIAHPNAELRFKQATDIAPEFAQLSSAADDKASAPMKIVVDGRAK 239 PTP S ++ ++G++IAHP+A+L K T+++ + + KA+AP+++ + G AK Sbjct: 227 PTPSSLAFVVARDGQVIAHPDAKLMLKPVTEVSAALTPDALTSLAKATAPLEVELAGAAK 286 Query: 240 LVRAQKIRGTDWSIVIAIDESEAMAGARSLLNTSLLSLILIVGIASVIGVAVTATAFRRL 299 L++AQ ++GTDW +VIA+D++EA AG RS+ ++++L+ A I TA +FRRL Sbjct: 287 LLKAQAVQGTDWYLVIALDKAEATAGLRSVARALGVAMVLLTLAAVGIAAFFTAQSFRRL 346 Query: 300 GQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRMA 359 QV AM IGSG GDLT RLP G DEVA IS SFN F+ ++ V+L++R + E ++ A Sbjct: 347 SQVRDAMDTIGSGGGDLTHRLPVVGNDEVAQISASFNTFIDKIGEVLLEVRASVENMKSA 406 Query: 360 SNEIATANQDLSTRTESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQG 419 + EI N+DLS RTE++A++L++T+A++ E++ +V S AA QA + + A+E A +G Sbjct: 407 TGEIEMGNRDLSLRTETSASNLQETSAALTELTTSVKNSAEAAVQATRLAGEASEAAVRG 466 Query: 420 GKVVSDAVTTIGEIEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 479 G+VVS AV+T+ I + SS+I II VID IAFQTNILALNAAVEAARAGE GRGFAVVA Sbjct: 467 GEVVSGAVSTMDAIAQSSSRISEIIGVIDSIAFQTNILALNAAVEAARAGENGRGFAVVA 526 Query: 480 HEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIA 539 EVR+LA+RSA AARE+K L++ + + V AG+ +V AG TM EIV V +I I Sbjct: 527 GEVRTLAQRSAAAAREIKALIQASEASVKAGAERVDAAGATMREIVEGIQRVSRIIGEID 586 Query: 540 RATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 596 A EQ GI +++R+V ++D QQNAALVEQS AAS+ L QA+ LA T+G FR+ Sbjct: 587 GAMHEQSAGISQIDRSVAEMDQATQQNAALVEQSTAASSMLNEQAHGLARTVGLFRL 643 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 264 bits (674), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 146/285 (51%), Positives = 204/285 (71%) Query: 313 SGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLST 372 +GDLTQ + G++EV ++ S +L ++ ++R ++A+ ++EIA N DLS Sbjct: 234 NGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSGASEIAVGNNDLSA 293 Query: 373 RTESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGE 432 RTE AASLE+TAASM +++ TV ++ A+QA Q + SA+E A +GGKVV+D V T+ E Sbjct: 294 RTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQKGGKVVADVVQTMHE 353 Query: 433 IEKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEA 492 I S +I I +VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA+RSA+A Sbjct: 354 IAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQA 413 Query: 493 AREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEV 552 A+E+K L++ +V+RV GSV V AG TMG+IV V ++ IA A+DEQ RGI ++ Sbjct: 414 AKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIASASDEQSRGIDQI 473 Query: 553 NRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRIS 597 +AV ++D + QQNA+LVE+SA+A+A+L+ QA+ L + F +S Sbjct: 474 GQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVLS 518 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 248 bits (634), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 161/343 (46%), Positives = 227/343 (66%), Gaps = 6/343 (1%) Query: 255 IAIDESEAMAGARSLLNTSLLSLILIVGIASVIGVAVTATA-FRRLGQVSQAMAAIGSGS 313 IA++++ + + S+L +L+V IA G+ ++ A RL + + +A S Sbjct: 180 IAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSLIAPMNRLIESIRHIA-----S 234 Query: 314 GDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRMASNEIATANQDLSTR 373 GDL +R+ +G +E+ ++ + +L + D+R+ + A+ ++EIA N DLS+R Sbjct: 235 GDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSR 294 Query: 374 TESAAASLEQTAASMAEISETVSRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEI 433 TE AASLE+TAASM +++ TV ++ A+QA + SA+E A +GGKVV + V T+ +I Sbjct: 295 TEQQAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDI 354 Query: 434 EKVSSQIGAIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAA 493 S +I II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA+RSA+AA Sbjct: 355 ASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAA 414 Query: 494 REVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVN 553 RE+K L+E +VSRV GS V AG TM EIV V ++ IA A+DEQ RGI +V Sbjct: 415 REIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVTRVTDIMGEIASASDEQSRGIDQVG 474 Query: 554 RAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTIGRFRI 596 AV ++D + QQNA+LVE+SAAA+A L+ QA+ L + FRI Sbjct: 475 LAVAEMDRVTQQNASLVEESAAAAAALEEQASRLTQAVAVFRI 517