BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3495.p         (212 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr5353 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ...   116   3e-26
PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...    95   1e-19
PA0839 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer...    91   1e-18
STM1437 [K] COG1309 Transcriptional regulator Sty Salmonella typ...    87   2e-17
AGc1821 [K] COG1309 Transcriptional regulator Atu Agrobacterium ...    80   4e-15

>mlr5353 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 197

 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 3/187 (1%)

Query: 17  AREELMETQELLLHAGLEVLTEKGFSATGIDEILSRVNVPKGSFYHYFASKEAYGLELIA 76
           AR+ L   +E LL AG   +   G++A G+ +I++  +   GSF ++FASKEA+  E++ 
Sbjct: 2   ARQSL---REKLLDAGFRTIWNSGYAAAGVRDIVAAADARPGSFTNHFASKEAFAGEVLD 58

Query: 77  LYGAYFARKLDKHFTNEDVPPLERLEHFIEDAKLGMSRFDFRRGCLIGNLGQEMGSLPES 136
            Y  Y +  ++     +  PP+ RL  +++     +   D+ RGC+IGNL  E     E 
Sbjct: 59  RYFTYVSGLVEAALAQDGTPPIGRLRRYLDVITSKLEAHDWARGCMIGNLSLEAAVHSEP 118

Query: 137 FRIRLVEVFQDWERRLSQCLKLAQKARQIPQTVHCDQMASAFWIGWEGAVLRAKLESSAK 196
            R++LV +F+ W +  + C+   Q A  I +T   + +A      W+GA+LR K+E S +
Sbjct: 119 LRVQLVAIFERWRQPFAVCIAEGQAAGDIAKTFEAEDLADFLLSSWQGAMLRMKVERSPE 178

Query: 197 PMDVFSQ 203
           P++ F +
Sbjct: 179 PLERFKK 185


>PA2196 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 194

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 94/187 (50%), Gaps = 13/187 (6%)

Query: 23  ETQELLLHAGLEVLTEKGFSATGIDEILSRVNVPKGSFYHYFASKEAYGLELIALYGAYF 82
           +T++ LL  G  ++  KGFS  G++EIL    VPKGSFYHYF SKE +G  L+  Y   +
Sbjct: 7   DTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVY 66

Query: 83  ARKLDKHFTNEDVPPLERL----EHFIEDAKLGMSRFDFRRGCLIGNLGQEMGSLPESFR 138
              +D+ F+   +   ERL    + ++++A       D +R CL+  L  E+  L ES R
Sbjct: 67  LADMDQRFSAPGLNARERLMSYWQKWLDNA---CPPCDEQR-CLVVKLSAEVADLSESMR 122

Query: 139 IRLVEVFQDWERRLSQCLKLAQKARQIPQTVHCD--QMASAFWIGWEGAVLRAKLESSAK 196
           I L +       RL  CL    + R       CD   MASA +  W GA L +KL  S  
Sbjct: 123 ITLRDGSDGIIERLVGCLG---QGRDDGSLAPCDARHMASALYQLWLGASLLSKLHRSPG 179

Query: 197 PMDVFSQ 203
           P++   Q
Sbjct: 180 PLETAMQ 186


>PA0839 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa
          Length = 196

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 17/189 (8%)

Query: 22  METQELLLHAGLEVLTEKGFSATGIDEILSRVNVPKGSFYHYFASKEAYGLELIA-LYGA 80
           ++ +EL+L  G EV+T +G+  TG+ EI+    +PKGSFYHYF SKEA+  + +  +Y  
Sbjct: 6   LDKRELILAKGSEVMTRRGYHGTGVLEIVQAARIPKGSFYHYFDSKEAFAQQALEHVYAP 65

Query: 81  YFARKLDKHFTNEDVPPLER--------LEHFIEDAKLGMSRFDFRRGCLIGNLGQEMGS 132
             AR   +   +    P ER        LEHF    K           C IG+L  EM  
Sbjct: 66  RLAR-YAQALGDSRFSPRERVLRYYGELLEHFARQEKPEYH-------CFIGSLSFEMAE 117

Query: 133 LPESFRIRLVEVFQDWERRLSQCLKLAQKARQIPQTVHCDQMASAFWIGWEGAVLRAKLE 192
           L      ++  + Q   + L  CL+ A++A ++     C  +A      W+GA+ R K+ 
Sbjct: 118 LSPPIAAKVESILQASAQILQDCLEQAREAGELAADEDCASLAGFIGFAWQGALARFKVG 177

Query: 193 SSAKPMDVF 201
           +   P++ F
Sbjct: 178 AGLAPLNAF 186


>STM1437 [K] COG1309 Transcriptional regulator Sty Salmonella typhimurium
           LT2
          Length = 199

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 92/177 (51%)

Query: 23  ETQELLLHAGLEVLTEKGFSATGIDEILSRVNVPKGSFYHYFASKEAYGLELIALYGAYF 82
           +T+E LL  G ++  ++GF+  G+ E+L    VPKGSFYHYF SKEA+G+ ++  + A +
Sbjct: 8   DTREHLLATGEQLCMQRGFTGMGLSELLKTAQVPKGSFYHYFRSKEAFGVAMLERHYACY 67

Query: 83  ARKLDKHFTNEDVPPLERLEHFIEDAKLGMSRFDFRRGCLIGNLGQEMGSLPESFRIRLV 142
            ++L  HFT+      +RL  + ++      +     GCL   L  E+  L E  R  + 
Sbjct: 68  HQRLTAHFTSGPGNHRDRLLAWYQETLKQFCQQGAISGCLTVKLSAEVCDLSEDMRSTMD 127

Query: 143 EVFQDWERRLSQCLKLAQKARQIPQTVHCDQMASAFWIGWEGAVLRAKLESSAKPMD 199
           +  Q+    L++ L+  + +  +  T      A   +  W GA L+AK+  SA P++
Sbjct: 128 KGAQEIMALLARALEDGRNSHCLHFTGQPLPQAQVLYALWLGANLQAKISRSAAPLE 184


>AGc1821 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 208

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 79/167 (47%)

Query: 24  TQELLLHAGLEVLTEKGFSATGIDEILSRVNVPKGSFYHYFASKEAYGLELIALYGAYFA 83
           T+  L+  G+  L   G+   GI  IL  V+VPKGSFY++FASK+ + + +I  Y   +A
Sbjct: 7   TRTRLISEGMRQLLAHGYEGVGIGPILKEVDVPKGSFYYFFASKDDFVVAVIEAYEQKYA 66

Query: 84  RKLDKHFTNEDVPPLERLEHFIEDAKLGMSRFDFRRGCLIGNLGQEMGSLPESFRIRLVE 143
              ++ F++  +  L+RL  + E  +L + +     GCL G + Q         R  L  
Sbjct: 67  HIRERLFSDTSLRALQRLSVYFETLELELKQDGPYAGCLYGVIAQTSAGRSALVRDALAI 126

Query: 144 VFQDWERRLSQCLKLAQKARQIPQTVHCDQMASAFWIGWEGAVLRAK 190
            F  WE  + + L  AQ    I        + +     +EGA++R K
Sbjct: 127 SFGRWETSIRELLTQAQYEDDIAGDEDVSDLCACIIEAYEGALIRVK 173