BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3491.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0712 [H] COG0054 Riboflavin synthase beta-chain Rso Ralstonia...   214   7e-56
NMB0684 [H] COG0054 Riboflavin synthase beta-chain Nme Neisseria...   192   4e-49
NMA0886 [H] COG0054 Riboflavin synthase beta-chain NmA Neisseria...   192   4e-49
CAC0593 [H] COG0054 Riboflavin synthase beta-chain Cac Clostridi...   122   3e-28
SP0175 [H] COG0054 Riboflavin synthase beta-chain Spn Streptococ...   121   5e-28

>RSc0712 [H] COG0054 Riboflavin synthase beta-chain Rso Ralstonia
           solanacearum
          Length = 164

 Score =  214 bits (544), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 113/164 (68%), Positives = 126/164 (76%), Gaps = 3/164 (1%)

Query: 1   MTIGTYDPDLNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALE 60
           M  G Y  +L GE LRIGIVQARFNE VC  L  AC+AEL+ LGVA ED+L VTVPGALE
Sbjct: 1   MDHGFYPTNLEGEGLRIGIVQARFNEPVCEALREACVAELEQLGVAGEDVLLVTVPGALE 60

Query: 61  IPLALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGLPIANAVLTT 120
           +PLALQKMAE+ QFDALIALGAVIRGETYHFELVSNESGAGITR+ LDF + IAN +LTT
Sbjct: 61  VPLALQKMAESGQFDALIALGAVIRGETYHFELVSNESGAGITRVCLDFNIAIANGILTT 120

Query: 121 ENDEQAEVRMAEKGADAARVAVEMANLSIVLEEL---GQATEEE 161
           + D QA  R  EKG D AR A+EMANL+  L+ L   GQ  E E
Sbjct: 121 DTDAQAHARTREKGRDCARTAIEMANLTAALDGLQDHGQDDENE 164


>NMB0684 [H] COG0054 Riboflavin synthase beta-chain Nme Neisseria
           meningitidis MC58
          Length = 158

 Score =  192 bits (487), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 120/152 (78%), Gaps = 1/152 (0%)

Query: 3   IGTYDPDLNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIP 62
           + T  P+L+G+ LRIGIVQARF  ++   +L  C   L+ LGVADE+I   TVPGALEIP
Sbjct: 1   MNTIAPNLDGKHLRIGIVQARFTNEIGSEMLKVCCRTLQELGVADENITVATVPGALEIP 60

Query: 63  LALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGLPIANAVLTTEN 122
           +AL   A +E+FDALIA+G VIRGETYHFELVSNESGAG++R+ LD+ +PIANAVLTTEN
Sbjct: 61  IALMNFASSEKFDALIAIGVVIRGETYHFELVSNESGAGVSRVALDYNIPIANAVLTTEN 120

Query: 123 DEQAEVRMAEKGADAARVAVEMANL-SIVLEE 153
           D QA  R+ EK +DAA+VAVE ANL +++LEE
Sbjct: 121 DAQAIERIEEKASDAAKVAVECANLVNLLLEE 152


>NMA0886 [H] COG0054 Riboflavin synthase beta-chain NmA Neisseria
           meningitidis Z2491
          Length = 158

 Score =  192 bits (487), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 120/152 (78%), Gaps = 1/152 (0%)

Query: 3   IGTYDPDLNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIP 62
           + T  P+L+G+ LRIGIVQARF  ++   +L  C   L+ LGVADE+I   TVPGALEIP
Sbjct: 1   MNTIAPNLDGKHLRIGIVQARFTNEIGSEMLKVCCRTLQELGVADENITVATVPGALEIP 60

Query: 63  LALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGLPIANAVLTTEN 122
           +AL   A +E+FDALIA+G VIRGETYHFELVSNESGAG++R+ LD+ +PIANAVLTTEN
Sbjct: 61  IALMNFASSEKFDALIAIGVVIRGETYHFELVSNESGAGVSRVALDYNIPIANAVLTTEN 120

Query: 123 DEQAEVRMAEKGADAARVAVEMANL-SIVLEE 153
           D QA  R+ EK +DAA+VAVE ANL +++LEE
Sbjct: 121 DAQAIERIEEKASDAAKVAVECANLVNLLLEE 152


>CAC0593 [H] COG0054 Riboflavin synthase beta-chain Cac Clostridium
           acetobutylicum
          Length = 155

 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 88/146 (60%), Gaps = 4/146 (2%)

Query: 6   YDPDLNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIPLAL 65
           Y+  L  ++L+ GIV  RFNE +   LL+  +  LK  G  ++ I     PGA EIPL  
Sbjct: 4   YEGKLISKNLKFGIVAGRFNEFIVSKLLSGAVDALKRHGCDEDSIELAWAPGAFEIPLIS 63

Query: 66  QKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGLPIANAVLTTENDEQ 125
           QKMAE+ ++DA+I LGAVIRG T HF+ VS+E   GI +  L  G P+   VLTT+N EQ
Sbjct: 64  QKMAESGKYDAVICLGAVIRGATSHFDYVSSEVSKGIAQTSLKTGCPVIFGVLTTDNIEQ 123

Query: 126 ----AEVRMAEKGADAARVAVEMANL 147
               A  +   KG DAA  A+EMANL
Sbjct: 124 AIERAGTKSGNKGFDAAVTAIEMANL 149


>SP0175 [H] COG0054 Riboflavin synthase beta-chain Spn Streptococcus
           pneumoniae TIGR4
          Length = 155

 Score =  121 bits (304), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 94/149 (63%), Gaps = 4/149 (2%)

Query: 3   IGTYDPDLNGESLRIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIP 62
           + TY+ +L   +++IGIV ARFNE +   LL+  L  LK   V ++DI    VPGA EIP
Sbjct: 1   MNTYEGNLVANNIKIGIVVARFNEFITSKLLSGALDNLKRENVNEKDIEVAWVPGAFEIP 60

Query: 63  LALQKMAETEQFDALIALGAVIRGETYHFELVSNESGAGITRIGLDFGLPIANAVLTTEN 122
           L   KMA+++++DA+I LGAVIRG T H++ V +E   GI +I L+  +P+   VLTT+ 
Sbjct: 61  LIASKMAKSKKYDAIICLGAVIRGNTSHYDYVCSEVSKGIAQISLNSEIPVMFGVLTTDT 120

Query: 123 DEQ----AEVRMAEKGADAARVAVEMANL 147
            EQ    A  +   KG++ A+ A+EM NL
Sbjct: 121 IEQAIERAGTKAGNKGSECAQGAIEMVNL 149