BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3487.p (494 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0708 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase... 790 0.0 NMA1952 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase... 756 0.0 NMB1694 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase... 754 0.0 PA5237 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase ... 748 0.0 YPO3769 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase... 734 0.0 >RSc0708 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Rso Ralstonia solanacearum Length = 503 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/501 (75%), Positives = 436/501 (87%), Gaps = 9/501 (1%) Query: 1 MKYTDLRDFISKLQQKGELKRVSHPVSSRLEMTEIADRTLRAEGPALLFEQ----VDQKN 56 M+Y DLRDF+++L++ GEL+R+ PVS RLEMTE+ DR LRAEGPA++FE+ + Sbjct: 1 MQYRDLRDFLAQLERIGELRRIRVPVSPRLEMTEVCDRLLRAEGPAVVFERPADGAQTYD 60 Query: 57 IPVLANLFGTPHRVALGMGAQSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWD 116 +PVLANLFGTP RVALGMGA+S+ ELR +G LL+ LKEPEPP+G+++ L + K++WD Sbjct: 61 MPVLANLFGTPRRVALGMGAESLDELRDVGRLLSALKEPEPPRGLREAGKLWTMAKAVWD 120 Query: 117 MAPKERSSAPCQDVVWEGQDVDLSRLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIY 176 MAP++ SS CQ++V EG DVDLSR+P+Q CWPGD APL+TWGLV+T+GPHKKRQNLGIY Sbjct: 121 MAPRKVSSPACQEIVLEGDDVDLSRIPVQTCWPGDAAPLVTWGLVVTRGPHKKRQNLGIY 180 Query: 177 RQQVLGPNKVIMRWLAHRGGALDFREHCIAHPGQPYPVVVALGADPATILGAVTPVPDSL 236 RQQV+ N+VIMRWLAHRGGALDFREH IAHPGQP+P+ VALGADPATILGAVTPVPD+L Sbjct: 181 RQQVINRNQVIMRWLAHRGGALDFREHAIAHPGQPFPIAVALGADPATILGAVTPVPDTL 240 Query: 237 SEYQFAGLLRGSRTELVKAMG-----SDLRVPASAEIVLEGHIYPDEHHASGFEHALEGP 291 SEYQFAGLLRGSRTEL + + + L+VPA AEIVLEGHI PD H SG++HALEGP Sbjct: 241 SEYQFAGLLRGSRTELAQCLTPSLAQAQLQVPAGAEIVLEGHIQPDPAHPSGYQHALEGP 300 Query: 292 YGDHTGYYNEQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQ 351 +GDHTGYYNEQDWFPVFT++RITMRRD IYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQ Sbjct: 301 FGDHTGYYNEQDWFPVFTVERITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQ 360 Query: 352 FAEITDFYLPPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDI 411 F EI DFYLPPEGCSYRMA+V MKK YAGHAKRVMFGVWSFLRQFMYTKFIVVVD+DVD+ Sbjct: 361 FPEIADFYLPPEGCSYRMALVSMKKQYAGHAKRVMFGVWSFLRQFMYTKFIVVVDDDVDL 420 Query: 412 RDWKEVIWAITTRVDPVRDTVLVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETNREW 471 RDWKEVIWAITTRVDP RDTV+V+NTPIDYLDFASP+SGLGSKMGIDATNKWPGET REW Sbjct: 421 RDWKEVIWAITTRVDPARDTVMVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETTREW 480 Query: 472 GTPIVMSDEVKKRVDTIWKDL 492 G PIVM VK RVD +W+ L Sbjct: 481 GQPIVMDAAVKSRVDAMWETL 501 >NMA1952 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases NmA Neisseria meningitidis Z2491 Length = 492 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/499 (74%), Positives = 423/499 (84%), Gaps = 12/499 (2%) Query: 1 MKYTDLRDFISKLQQKGELKRVSHPVSSRLEMTEIADRTLRAEGPALLFEQV-----DQK 55 MKY DLRDFI+ L+Q+G+LKR++HPVS LEMTEIADR LRAEGPALLFE + Sbjct: 1 MKYKDLRDFIAMLEQQGKLKRIAHPVSPHLEMTEIADRVLRAEGPALLFEHPVKPDGTRY 60 Query: 56 NIPVLANLFGTPHRVALGMGAQSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLW 115 + PVLANLFGTP RVA+GMGA S+S+LR IG LA LKEPEPPKGIKD L+K +W Sbjct: 61 DYPVLANLFGTPERVAMGMGADSVSKLREIGQTLAYLKEPEPPKGIKDAFSKLPLLKDIW 120 Query: 116 DMAPKERSSAPCQDVVWEGQDVDLSRLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGI 175 MAP +APCQ++VWEG+DVDL +LPIQHCWP D+APL+TWGL +T+GPHKKRQNLGI Sbjct: 121 SMAPNVVKNAPCQEIVWEGEDVDLYQLPIQHCWPEDVAPLVTWGLTVTRGPHKKRQNLGI 180 Query: 176 YRQQVLGPNKVIMRWLAHRGGALDFREHCIAHPGQPYPVVVALGADPATILGAVTPVPDS 235 YRQQ++G NK+IMRWL+HRGGALD++E +P PYPV V LG DPATILGAVTPVPD+ Sbjct: 181 YRQQLIGINKLIMRWLSHRGGALDYQEFRKLNPDTPYPVAVVLGCDPATILGAVTPVPDT 240 Query: 236 LSEYQFAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEHHASGFEHALEGPYGDH 295 LSEYQFAGLLRGSRTELVK +G+DL+VPA AEIVLEG I+P+E ALEGPYGDH Sbjct: 241 LSEYQFAGLLRGSRTELVKCIGNDLQVPARAEIVLEGVIHPNET-------ALEGPYGDH 293 Query: 296 TGYYNEQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEI 355 TGYYNEQD FPVFT++RITMR + IYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQF EI Sbjct: 294 TGYYNEQDHFPVFTVERITMRENPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEI 353 Query: 356 TDFYLPPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWK 415 TDFYLPPEGCSYRMAVV MKK YAGHAKRVM G WSFLRQFMYTKFI+VVD+DVD+RDWK Sbjct: 354 TDFYLPPEGCSYRMAVVSMKKQYAGHAKRVMMGCWSFLRQFMYTKFIIVVDDDVDVRDWK 413 Query: 416 EVIWAITTRVDPVRDTVLVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETNREWGTPI 475 EVIWA+TTR+DPVRDTVL++NTPIDYLDFASP+SGLG KMG+DATNKWPGET+REWG I Sbjct: 414 EVIWAVTTRMDPVRDTVLMENTPIDYLDFASPVSGLGGKMGLDATNKWPGETDREWGRVI 473 Query: 476 VMSDEVKKRVDTIWKDLGI 494 V ++D IW++LG+ Sbjct: 474 KKDPAVTAKIDEIWEELGL 492 >NMB1694 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Nme Neisseria meningitidis MC58 Length = 494 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/499 (74%), Positives = 424/499 (84%), Gaps = 12/499 (2%) Query: 1 MKYTDLRDFISKLQQKGELKRVSHPVSSRLEMTEIADRTLRAEGPALLFEQVDQKN---- 56 MKY DLRDFI+ L+Q+G+LKRV+HP+S LEMTEIADR LRAEGPALLFE + + Sbjct: 3 MKYKDLRDFIAMLEQQGKLKRVAHPISPYLEMTEIADRVLRAEGPALLFENPIKPDGTRY 62 Query: 57 -IPVLANLFGTPHRVALGMGAQSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLW 115 PVLANLFGTP RVA+GMGA S+S+LR IG LA LKEPEPPKGIKD L+K +W Sbjct: 63 GYPVLANLFGTPERVAMGMGADSVSKLREIGQTLAYLKEPEPPKGIKDAFSKLPLLKDIW 122 Query: 116 DMAPKERSSAPCQDVVWEGQDVDLSRLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGI 175 MAP +APCQ++VWEG+DVDL +LPIQHCWP D+APL+TWGL +T+GPHKKRQNLGI Sbjct: 123 SMAPNVVKNAPCQEIVWEGEDVDLYQLPIQHCWPEDVAPLVTWGLTVTRGPHKKRQNLGI 182 Query: 176 YRQQVLGPNKVIMRWLAHRGGALDFREHCIAHPGQPYPVVVALGADPATILGAVTPVPDS 235 YRQQ++G NK+IMRWL+HRGGALD++E +P PYPV V LG DPATILGAVTPVPD+ Sbjct: 183 YRQQLIGKNKLIMRWLSHRGGALDYQEFRKLNPDTPYPVAVVLGCDPATILGAVTPVPDT 242 Query: 236 LSEYQFAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEHHASGFEHALEGPYGDH 295 LSEYQFAGLLRGSRTELVK +G+DL+VPA AEIVLEG I+P+E ALEGPYGDH Sbjct: 243 LSEYQFAGLLRGSRTELVKCIGNDLQVPARAEIVLEGVIHPNET-------ALEGPYGDH 295 Query: 296 TGYYNEQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEI 355 TGYYNEQD+FPVFT++RITMR + IYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQF EI Sbjct: 296 TGYYNEQDYFPVFTVERITMRENPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEI 355 Query: 356 TDFYLPPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWK 415 TDFYLPPEGCSYRMAVV MKK YAGHAKRVM G WSFLRQFMYTKFI+VVD+DV++RDWK Sbjct: 356 TDFYLPPEGCSYRMAVVSMKKQYAGHAKRVMMGCWSFLRQFMYTKFIIVVDDDVNVRDWK 415 Query: 416 EVIWAITTRVDPVRDTVLVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETNREWGTPI 475 EVIWA+TTR+DPVRDTVLV+NTPIDYLDFASP+SGLG KMG+DATNKWPGET+REWG I Sbjct: 416 EVIWAVTTRMDPVRDTVLVENTPIDYLDFASPVSGLGGKMGLDATNKWPGETDREWGRVI 475 Query: 476 VMSDEVKKRVDTIWKDLGI 494 V ++D IW++LG+ Sbjct: 476 KKDPAVTAKIDGIWEELGL 494 >PA5237 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Pae Pseudomonas aeruginosa Length = 488 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/494 (72%), Positives = 412/494 (83%), Gaps = 7/494 (1%) Query: 1 MKYTDLRDFISKLQQKGELKRVSHPVSSRLEMTEIADRTLRAEGPALLFEQVDQKNIPVL 60 M + DLRDFI++L+Q+G LKR+ P+S LEMTE+ DRTLRA+GPALLFE+ ++PVL Sbjct: 1 MTFKDLRDFIAQLEQRGALKRIQVPISPVLEMTEVCDRTLRAKGPALLFEKPTGFDMPVL 60 Query: 61 ANLFGTPHRVALGMGAQSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPK 120 NLFGTP RVALGMGA+ + LR IG LLA+LKEPEPPKG+KD + + + MAPK Sbjct: 61 GNLFGTPERVALGMGAEDVGALREIGKLLAQLKEPEPPKGLKDAWAKLPMYRKVLSMAPK 120 Query: 121 ERSSAPCQDVVWEGQDVDLSRLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQV 180 APCQ+VV EG+DVDL RLP+Q CWPGD+ PLITWGL +T+GP+K+RQNLGIYRQQV Sbjct: 121 VLKDAPCQEVVEEGEDVDLGRLPVQTCWPGDVGPLITWGLTVTRGPNKERQNLGIYRQQV 180 Query: 181 LGPNKVIMRWLAHRGGALDFREHCIAHPGQPYPVVVALGADPATILGAVTPVPDSLSEYQ 240 +G NKVIMRWL+HRGGALD+RE C HPGQPYPV VALGADPATILGAVTPVPD+LSEY Sbjct: 181 IGRNKVIMRWLSHRGGALDYREWCQKHPGQPYPVAVALGADPATILGAVTPVPDTLSEYA 240 Query: 241 FAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEHHASGFEHALEGPYGDHTGYYN 300 FAGLLRG RTELVK GSDL+VPASAEIVLEG I+P E A EGPYGDHTGYYN Sbjct: 241 FAGLLRGHRTELVKCRGSDLQVPASAEIVLEGVIHPG-------EMADEGPYGDHTGYYN 293 Query: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360 E D FPVFT++R+T R+ IYHSTYTG+PPDEPA+LGVALNEVFVP+LQKQF EI DFYL Sbjct: 294 EVDRFPVFTVERVTRRQKPIYHSTYTGRPPDEPAILGVALNEVFVPILQKQFPEIVDFYL 353 Query: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWA 420 PPEGCSYRMAVV MKK Y GHAKRVM GVWSFLRQFMYTKF++V D+D+D RDW +VIWA Sbjct: 354 PPEGCSYRMAVVTMKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVTDDDIDARDWNDVIWA 413 Query: 421 ITTRVDPVRDTVLVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETNREWGTPIVMSDE 480 ITTR+DP RDTV++DNTPIDYLDFASP+SGLGSKMG+DAT+KWPGET+REWG IV + Sbjct: 414 ITTRMDPKRDTVMIDNTPIDYLDFASPVSGLGSKMGLDATHKWPGETSREWGRAIVKDEA 473 Query: 481 VKKRVDTIWKDLGI 494 V +R+D +W LGI Sbjct: 474 VTRRIDALWSSLGI 487 >YPO3769 [H] COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases Ype Yersinia pestis Length = 498 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/494 (69%), Positives = 409/494 (82%), Gaps = 7/494 (1%) Query: 1 MKYTDLRDFISKLQQKGELKRVSHPVSSRLEMTEIADRTLRAEGPALLFEQVDQKNIPVL 60 MKY DLRDF+S L+Q+GELKR+S P+ LEMTEIADRTLRA GPALLFE ++PVL Sbjct: 4 MKYRDLRDFLSLLEQRGELKRISQPIDPYLEMTEIADRTLRAGGPALLFENPKGYSMPVL 63 Query: 61 ANLFGTPHRVALGMGAQSISELRRIGHLLARLKEPEPPKGIKDVLDLGGLVKSLWDMAPK 120 NLFGT RVA+GMG + +S LR +G LLA LKEP+PPKG +D+ D K + +M K Sbjct: 64 CNLFGTAKRVAMGMGQEDVSALRDVGKLLAFLKEPDPPKGFRDLFDKLPKFKQVLNMPTK 123 Query: 121 ERSSAPCQDVVWEGQDVDLSRLPIQHCWPGDIAPLITWGLVITKGPHKKRQNLGIYRQQV 180 +SAPCQ+ VW+G+DVDLSR+P+ HCWP D APL++WGL IT+GPHK+RQNLGIYRQQV Sbjct: 124 RLNSAPCQEQVWQGEDVDLSRIPVMHCWPEDAAPLVSWGLTITRGPHKERQNLGIYRQQV 183 Query: 181 LGPNKVIMRWLAHRGGALDFREHCIAHPGQPYPVVVALGADPATILGAVTPVPDSLSEYQ 240 LG NK+IMRWL+HRGGALD++E C AHPG+ +PV VALGADPATIL AVTPVPD+LSEY Sbjct: 184 LGKNKLIMRWLSHRGGALDYQEWCEAHPGERFPVAVALGADPATILAAVTPVPDTLSEYA 243 Query: 241 FAGLLRGSRTELVKAMGSDLRVPASAEIVLEGHIYPDEHHASGFEHALEGPYGDHTGYYN 300 FAGLLRG +TE+VK + +DL VPASAEIVLEG+I + A EGPYGDHTGYYN Sbjct: 244 FAGLLRGHKTEVVKCLSNDLEVPASAEIVLEGYI-------EQGDMAPEGPYGDHTGYYN 296 Query: 301 EQDWFPVFTIDRITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFAEITDFYL 360 E D FPVFT+ IT R+DAIYHSTYTG+PPDEPAV+GVALNEVFVP+LQKQF EI DFYL Sbjct: 297 EIDNFPVFTVTHITQRQDAIYHSTYTGRPPDEPAVMGVALNEVFVPILQKQFPEIVDFYL 356 Query: 361 PPEGCSYRMAVVQMKKSYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVDIRDWKEVIWA 420 PPEGCSYR+AVV +KK YAGHAKRVM G+WSFLRQFMYTKF++V D+D++ RDW +VIWA Sbjct: 357 PPEGCSYRLAVVTIKKQYAGHAKRVMMGIWSFLRQFMYTKFVIVCDDDINARDWNDVIWA 416 Query: 421 ITTRVDPVRDTVLVDNTPIDYLDFASPISGLGSKMGIDATNKWPGETNREWGTPIVMSDE 480 ITTR+DP RDTVL++NTPIDYLDFASP+SGLGSKMG+DATNKWP ET REWG PI M ++ Sbjct: 417 ITTRMDPSRDTVLIENTPIDYLDFASPVSGLGSKMGLDATNKWPAETPREWGRPIKMDED 476 Query: 481 VKKRVDTIWKDLGI 494 V+ R+D +W +L I Sbjct: 477 VRARIDALWDELAI 490