BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3479.p (191 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2207 [R] COG0655 Multimeric flavodoxin WrbA Rso Ralstonia sol... 256 2e-68 AGl1309 [R] COG0655 Multimeric flavodoxin WrbA Atu Agrobacterium... 189 3e-48 XF1133 [R] COG0655 Multimeric flavodoxin WrbA Xfa Xylella fastid... 170 2e-42 RSc0633 [R] COG0655 Multimeric flavodoxin WrbA Rso Ralstonia sol... 166 4e-41 XF1733 [R] COG0655 Multimeric flavodoxin WrbA Xfa Xylella fastid... 164 1e-40 >RSc2207 [R] COG0655 Multimeric flavodoxin WrbA Rso Ralstonia solanacearum Length = 190 Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 122/191 (63%), Positives = 150/191 (78%), Gaps = 4/191 (2%) Query: 1 MTKVAIVYHSGYGHTKKQAEAVQAGAAGVAGAAVELIAISAEGTITDEQWASLDAADAII 60 M +VA+VYHSGYGHTKKQAEAV AG AGA LI+++ + D+ WA L DAI+ Sbjct: 1 MARVAVVYHSGYGHTKKQAEAVFAGVQ-AAGAEAHLISVA---DVNDQTWALLAGVDAIV 56 Query: 61 FGSPTYMGTVSWQFKKFADASSKPWFSQKWKDKVGAAFTNSATMNGDKLSTLHYLFTLGM 120 FG+PTYMG VS FKKFADASSK WF+ +WKDK+ A FTNSA+MNGDK +++ YL+TL Sbjct: 57 FGAPTYMGGVSGDFKKFADASSKAWFTGQWKDKIAAGFTNSASMNGDKYASIQYLWTLSQ 116 Query: 121 QHSMIWVGTGLMPANSKAAQRNDINFVGSFSGLMAQSPSDSSPEEGPLPGDLETAKLFGA 180 QH MIWVGTG+MPA+SKAA RNDIN++G F G ++Q+PSD+SPEEGPLPGDLETA+LFG Sbjct: 117 QHGMIWVGTGMMPASSKAATRNDINYMGGFGGALSQAPSDASPEEGPLPGDLETARLFGE 176 Query: 181 RVVETAAKFKK 191 RVV +F + Sbjct: 177 RVVAVTRQFVR 187 >AGl1309 [R] COG0655 Multimeric flavodoxin WrbA Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 193 Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 110/189 (58%), Positives = 137/189 (72%), Gaps = 7/189 (3%) Query: 2 TKVAIVYHSGYGHTKKQAEAVQAGAAGVAGAAVELIAISAEGTITDEQWASLDAADAIIF 61 + +VYHSGYGHT + AEAV GA L AI AEG ++++ WA+LDAADAIIF Sbjct: 7 SNTVVVYHSGYGHTHRMAEAVAEGAEAT------LHAIDAEGNLSEDGWAALDAADAIIF 60 Query: 62 GSPTYMGTVSWQFKKFADASSKPWFSQKWKDKVGAAFTNSATMNGDKLSTLHYLFTLGMQ 121 G+PTYMG SWQFKKFADASSKPWFS KW+DKV FTNSA++NGDKL+TL YL L Q Sbjct: 61 GTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQ 120 Query: 122 HSMIWVGTGLMPANSKAAQRNDINFVGSFSGLMAQSPSDSSPEEGPLPGDLETAKLFGAR 181 H +WV G+ P+N K++ RND N +GS+ MAQS +D++PEE + GDLETA+L+GAR Sbjct: 121 HGGLWVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADAAPEEMSV-GDLETARLYGAR 179 Query: 182 VVETAAKFK 190 V A + K Sbjct: 180 VANVARQHK 188 >XF1133 [R] COG0655 Multimeric flavodoxin WrbA Xfa Xylella fastidiosa 9a5c Length = 189 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 87/189 (46%), Positives = 124/189 (65%), Gaps = 6/189 (3%) Query: 4 VAIVYHSGYGHTKKQAEAVQAGAAGVAGAAVELIAISAEGTITDEQWASLDAADAIIFGS 63 ++IVY SGYGHT + A+AV AG + GA V L+A+ A+G++ +W L+ +DAIIFGS Sbjct: 3 ISIVYDSGYGHTAQVAKAVAAGVQEIKGADVRLMAV-ADGSV---EWEILEKSDAIIFGS 58 Query: 64 PTYMGTVSWQFKKF-ADASSKPWFSQKWKDKVGAAFTNSATMNGDKLSTLHYLFTLGMQH 122 PTY G +S + K+F D++ + W QKW++K+ A FTNS +GDKL++L + QH Sbjct: 59 PTYNGLISAKLKQFFEDSTKQVWVPQKWRNKIAAGFTNSGAQHGDKLNSLMSMVLFAAQH 118 Query: 123 SMIWVGTGLMPA-NSKAAQRNDINFVGSFSGLMAQSPSDSSPEEGPLPGDLETAKLFGAR 181 MIWVG LMP NS ND+N +GS+ G+M Q+ +D +PE P DL+TA+ G R Sbjct: 119 GMIWVGLDLMPGNNSSTGSPNDLNRLGSWLGVMTQANNDEAPEIAPPASDLKTAQYLGRR 178 Query: 182 VVETAAKFK 190 V ET +F+ Sbjct: 179 VAETVRRFQ 187 >RSc0633 [R] COG0655 Multimeric flavodoxin WrbA Rso Ralstonia solanacearum Length = 190 Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 92/188 (48%), Positives = 116/188 (61%), Gaps = 12/188 (6%) Query: 4 VAIVYHSGYGHTKKQAEAVQAGAAGVAGAAVELIAISAEGTITDE-QWASLDAADAIIFG 62 V+I+Y SGYGHTKKQAEA+ G GA LIA++ DE W +L +DAIIFG Sbjct: 3 VSIIYDSGYGHTKKQAEAIAEGVRQTPGAEAVLIALA-----NDEIDWEALAGSDAIIFG 57 Query: 63 SPTYMGTVSWQFKKF-ADASSKPWFSQKWKDKVGAAFTNSATMNGDKLSTLHYLFTLGMQ 121 SPTY G+VS +FKKF D++ K W Q W++K+ A FTNS M+GDKL +L + Q Sbjct: 58 SPTYNGSVSARFKKFMEDSTRKAWMPQLWRNKIAAGFTNSGAMHGDKLHSLVTMALFAAQ 117 Query: 122 HSMIWVGTGLMPANSKAAQRNDINFVGSFSGLMAQSPSDSSPEEGPLPGDLETAKLFGAR 181 H MIWVG L P + ND+N VG + G MAQS +D SPE P+ DL TA+ G R Sbjct: 118 HGMIWVGLDLFPGKTA----NDMNRVGGWLGAMAQS-NDESPELSPIASDLSTARHLGRR 172 Query: 182 VVETAAKF 189 V E +F Sbjct: 173 VAEITRQF 180 >XF1733 [R] COG0655 Multimeric flavodoxin WrbA Xfa Xylella fastidiosa 9a5c Length = 192 Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/190 (46%), Positives = 121/190 (63%), Gaps = 6/190 (3%) Query: 4 VAIVYHSGYGHTKKQAEAVQAGAAGVAGAAVELIAISAEGTITDEQWASLDAADAIIFGS 63 ++IVY SGYGHT++QA AV G A V GA +LI + +G + W++L+A+DAI+FGS Sbjct: 3 ISIVYDSGYGHTERQARAVAEGVAKVPGAQAKLITV-GQGEM---DWSALEASDAIVFGS 58 Query: 64 PTYMGTVSWQFKKFADASSKP-WFSQKWKDKVGAAFTNSATMNGDKLSTLHYLFTLGMQH 122 PTY G++S + K+F + S+K W QKW++K+ A FTNS +GDKL+TL + QH Sbjct: 59 PTYNGSLSAKLKQFFEDSTKAAWSEQKWRNKIAAGFTNSGAQHGDKLNTLIGMALFAAQH 118 Query: 123 SMIWVGTGLMPANSKA-AQRNDINFVGSFSGLMAQSPSDSSPEEGPLPGDLETAKLFGAR 181 MIWVG LMP NS + D+N G++ G MAQS D P+ P DL+TA G R Sbjct: 119 GMIWVGLDLMPGNSSSTGSVEDLNRHGAWLGAMAQSNMDEGPDVSPPASDLKTAAYLGQR 178 Query: 182 VVETAAKFKK 191 V ET +F + Sbjct: 179 VAETTQRFAR 188